Hb_002890_030

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2890: 24276-37869
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_002526758.1
description Disease resistance protein RGA2, putative [Ricinus communis]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID B9SL89
description Disease resistance protein RGA2, putative OS=Ricinus communis GN=RCOM_1292200 PE=4 SV=1
Gene Ontology
ID GO:0016787
description disease resistance protein rga4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30180: 24879-25123 , PASA_asmbl_30181: 28743-31190 , PASA_asmbl_30182: 28743-29364 , PASA_asmbl_30185: 36821-37025
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_030 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
2 Hb_000861_070 0.0752397499 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012654_010 0.0860918022 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
4 Hb_004204_080 0.0917406005 - - diacylglycerol kinase, theta, putative [Ricinus communis]
5 Hb_003097_190 0.0922097268 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
6 Hb_001057_010 0.0949324946 - - cation-transporting atpase plant, putative [Ricinus communis]
7 Hb_008643_060 0.1000298961 - - unnamed protein product [Coffea canephora]
8 Hb_004724_320 0.1029349762 - - Vesicle-associated membrane protein, putative [Ricinus communis]
9 Hb_000906_060 0.1044126488 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820 [Populus euphratica]
10 Hb_000815_210 0.1047284601 - - uncoupling protein 3, partial [Manihot esculenta]
11 Hb_000200_140 0.1083030776 - - PREDICTED: uncharacterized protein LOC104591989 [Nelumbo nucifera]
12 Hb_004162_280 0.1084431652 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
13 Hb_010710_110 0.108487487 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
14 Hb_005307_030 0.1086750982 - - hypothetical protein POPTR_0006s04640g [Populus trichocarpa]
15 Hb_000001_180 0.1113503759 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
16 Hb_004678_020 0.1115351439 - - PREDICTED: protein YIF1B [Jatropha curcas]
17 Hb_156850_030 0.1127284437 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
18 Hb_000139_250 0.1129328537 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
19 Hb_002341_030 0.1133283697 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]
20 Hb_005237_010 0.1133402781 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]

Gene co-expression network

sample Hb_002890_030 Hb_002890_030 Hb_000861_070 Hb_000861_070 Hb_002890_030--Hb_000861_070 Hb_012654_010 Hb_012654_010 Hb_002890_030--Hb_012654_010 Hb_004204_080 Hb_004204_080 Hb_002890_030--Hb_004204_080 Hb_003097_190 Hb_003097_190 Hb_002890_030--Hb_003097_190 Hb_001057_010 Hb_001057_010 Hb_002890_030--Hb_001057_010 Hb_008643_060 Hb_008643_060 Hb_002890_030--Hb_008643_060 Hb_004724_320 Hb_004724_320 Hb_000861_070--Hb_004724_320 Hb_075481_030 Hb_075481_030 Hb_000861_070--Hb_075481_030 Hb_000521_260 Hb_000521_260 Hb_000861_070--Hb_000521_260 Hb_000008_330 Hb_000008_330 Hb_000861_070--Hb_000008_330 Hb_004162_280 Hb_004162_280 Hb_000861_070--Hb_004162_280 Hb_001504_160 Hb_001504_160 Hb_012654_010--Hb_001504_160 Hb_000107_100 Hb_000107_100 Hb_012654_010--Hb_000107_100 Hb_000139_250 Hb_000139_250 Hb_012654_010--Hb_000139_250 Hb_012654_010--Hb_001057_010 Hb_005214_160 Hb_005214_160 Hb_012654_010--Hb_005214_160 Hb_002701_080 Hb_002701_080 Hb_012654_010--Hb_002701_080 Hb_001797_050 Hb_001797_050 Hb_004204_080--Hb_001797_050 Hb_005730_030 Hb_005730_030 Hb_004204_080--Hb_005730_030 Hb_005532_050 Hb_005532_050 Hb_004204_080--Hb_005532_050 Hb_000031_050 Hb_000031_050 Hb_004204_080--Hb_000031_050 Hb_022408_010 Hb_022408_010 Hb_004204_080--Hb_022408_010 Hb_001541_020 Hb_001541_020 Hb_004204_080--Hb_001541_020 Hb_010068_030 Hb_010068_030 Hb_003097_190--Hb_010068_030 Hb_003097_190--Hb_012654_010 Hb_000152_560 Hb_000152_560 Hb_003097_190--Hb_000152_560 Hb_003097_190--Hb_001057_010 Hb_003097_190--Hb_000861_070 Hb_000340_510 Hb_000340_510 Hb_001057_010--Hb_000340_510 Hb_005237_010 Hb_005237_010 Hb_001057_010--Hb_005237_010 Hb_017168_010 Hb_017168_010 Hb_001057_010--Hb_017168_010 Hb_002942_220 Hb_002942_220 Hb_001057_010--Hb_002942_220 Hb_008643_060--Hb_004204_080 Hb_002601_120 Hb_002601_120 Hb_008643_060--Hb_002601_120 Hb_000270_780 Hb_000270_780 Hb_008643_060--Hb_000270_780 Hb_001575_080 Hb_001575_080 Hb_008643_060--Hb_001575_080 Hb_008643_060--Hb_000861_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.23365 5.01662 1.90535 1.59768 9.48256 8.1335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.11659 4.17524 5.22744 1.76484 1.06193

CAGE analysis