Hb_002890_050

Information

Type -
Description -
Location Contig2890: 79954-80299
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_050 0.0 - - -
2 Hb_014034_010 0.0009713212 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_001221_120 0.0024626534 - - cytochrome P450, putative [Ricinus communis]
4 Hb_001514_160 0.0056722106 - - hypothetical protein JCGZ_16070 [Jatropha curcas]
5 Hb_009142_030 0.007617014 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_055880_010 0.0106246008 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_159957_020 0.0340427888 - - -
8 Hb_000159_030 0.0357509121 - - putative glycosyltransferase, partial [Aralia elata]
9 Hb_000967_030 0.0533995574 - - -
10 Hb_039791_010 0.0749682034 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like isoform X2 [Jatropha curcas]
11 Hb_019299_050 0.0931568021 - - -
12 Hb_005625_050 0.1148738781 - - hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
13 Hb_007757_090 0.1226181234 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
14 Hb_006261_010 0.1289842254 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
15 Hb_115414_010 0.1385733128 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
16 Hb_001959_280 0.1463906548 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
17 Hb_035726_010 0.1504607947 - - Insulin-degrading enzyme, putative [Ricinus communis]
18 Hb_033843_020 0.1616632477 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
19 Hb_000946_020 0.1635715336 - - hypothetical protein PRUPE_ppa023262mg [Prunus persica]
20 Hb_004503_010 0.1638968738 - - PREDICTED: EG45-like domain containing protein [Prunus mume]

Gene co-expression network

sample Hb_002890_050 Hb_002890_050 Hb_014034_010 Hb_014034_010 Hb_002890_050--Hb_014034_010 Hb_001221_120 Hb_001221_120 Hb_002890_050--Hb_001221_120 Hb_001514_160 Hb_001514_160 Hb_002890_050--Hb_001514_160 Hb_009142_030 Hb_009142_030 Hb_002890_050--Hb_009142_030 Hb_055880_010 Hb_055880_010 Hb_002890_050--Hb_055880_010 Hb_159957_020 Hb_159957_020 Hb_002890_050--Hb_159957_020 Hb_014034_010--Hb_001221_120 Hb_014034_010--Hb_001514_160 Hb_014034_010--Hb_009142_030 Hb_014034_010--Hb_055880_010 Hb_014034_010--Hb_159957_020 Hb_001221_120--Hb_001514_160 Hb_001221_120--Hb_009142_030 Hb_001221_120--Hb_055880_010 Hb_001221_120--Hb_159957_020 Hb_001514_160--Hb_009142_030 Hb_001514_160--Hb_055880_010 Hb_001514_160--Hb_159957_020 Hb_009142_030--Hb_055880_010 Hb_009142_030--Hb_159957_020 Hb_055880_010--Hb_159957_020 Hb_000159_030 Hb_000159_030 Hb_159957_020--Hb_000159_030 Hb_000967_030 Hb_000967_030 Hb_159957_020--Hb_000967_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.6767 0.74971

CAGE analysis