Hb_002890_060

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2890: 83367-86751
Sequence    

Annotation

kegg
ID egr:104434693
description putative disease resistance protein RGA1
nr
ID XP_010045876.1
description PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A059D1D2
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01252 PE=4 SV=1
Gene Ontology
ID GO:0016787
description disease resistance protein rga1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30190: 84907-85127
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_060 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
2 Hb_000111_130 0.0725951292 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
3 Hb_001274_040 0.0746447961 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
4 Hb_009778_030 0.0826730046 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
5 Hb_000123_310 0.09041572 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
6 Hb_000146_110 0.0905107589 - - resveratrol/hydroxycinnamic acid O-glucosyltransferase [Vitis labrusca]
7 Hb_000003_620 0.1090928691 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
8 Hb_007371_020 0.1193252051 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
9 Hb_011925_010 0.1203741919 - - PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
10 Hb_000625_040 0.121395373 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
11 Hb_000318_460 0.1252451503 - - hypothetical protein CICLE_v10028333mg [Citrus clementina]
12 Hb_000767_040 0.1267504581 - - cytochrome P450, putative [Ricinus communis]
13 Hb_011054_030 0.131909186 - - PREDICTED: uncharacterized protein LOC103324687 [Prunus mume]
14 Hb_005054_300 0.1325692544 - - aquaporin [Hevea brasiliensis]
15 Hb_004712_140 0.1332444305 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
16 Hb_041290_030 0.1355923395 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
17 Hb_010962_030 0.1370197798 - - kinase, putative [Ricinus communis]
18 Hb_001365_040 0.137122665 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X2 [Populus euphratica]
19 Hb_000039_100 0.1396048457 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
20 Hb_149056_010 0.1414043676 - - hypothetical protein CICLE_v10016664mg [Citrus clementina]

Gene co-expression network

sample Hb_002890_060 Hb_002890_060 Hb_000111_130 Hb_000111_130 Hb_002890_060--Hb_000111_130 Hb_001274_040 Hb_001274_040 Hb_002890_060--Hb_001274_040 Hb_009778_030 Hb_009778_030 Hb_002890_060--Hb_009778_030 Hb_000123_310 Hb_000123_310 Hb_002890_060--Hb_000123_310 Hb_000146_110 Hb_000146_110 Hb_002890_060--Hb_000146_110 Hb_000003_620 Hb_000003_620 Hb_002890_060--Hb_000003_620 Hb_000111_130--Hb_001274_040 Hb_000111_130--Hb_000003_620 Hb_001365_040 Hb_001365_040 Hb_000111_130--Hb_001365_040 Hb_000111_130--Hb_009778_030 Hb_000111_130--Hb_000146_110 Hb_000039_100 Hb_000039_100 Hb_001274_040--Hb_000039_100 Hb_000767_040 Hb_000767_040 Hb_001274_040--Hb_000767_040 Hb_000318_460 Hb_000318_460 Hb_001274_040--Hb_000318_460 Hb_008707_020 Hb_008707_020 Hb_001274_040--Hb_008707_020 Hb_009778_030--Hb_000146_110 Hb_009778_030--Hb_000003_620 Hb_009778_030--Hb_000123_310 Hb_001363_030 Hb_001363_030 Hb_009778_030--Hb_001363_030 Hb_000123_310--Hb_000146_110 Hb_005054_300 Hb_005054_300 Hb_000123_310--Hb_005054_300 Hb_041290_030 Hb_041290_030 Hb_000123_310--Hb_041290_030 Hb_021596_070 Hb_021596_070 Hb_000123_310--Hb_021596_070 Hb_000146_110--Hb_000003_620 Hb_007371_020 Hb_007371_020 Hb_000146_110--Hb_007371_020 Hb_000003_620--Hb_001363_030 Hb_000003_620--Hb_007371_020 Hb_000003_620--Hb_001365_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.84669 0.0850726 0.309811 0 0.0154684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.488582 0.247536

CAGE analysis