Hb_002890_080

Information

Type -
Description -
Location Contig2890: 110352-110828
Sequence    

Annotation

kegg
ID rcu:RCOM_0496640
description hypothetical protein
nr
ID XP_002527837.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SPB8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0496640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30192: 111543-118162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001439_090 0.1284806494 - - conserved hypothetical protein [Ricinus communis]
3 Hb_024650_040 0.1926300662 - - PREDICTED: josephin-like protein [Jatropha curcas]
4 Hb_015057_030 0.2091292638 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-52, partial [Jatropha curcas]
5 Hb_006469_120 0.2232557331 - - hypothetical protein POPTR_0005s16430g [Populus trichocarpa]
6 Hb_002890_070 0.2281975084 - - ATP-dependent RNA helicase family protein [Populus trichocarpa]
7 Hb_051067_010 0.2417499741 - - -
8 Hb_006277_070 0.2468627992 - - conserved hypothetical protein [Ricinus communis]
9 Hb_103739_010 0.2480152401 - - sodium/hydrogen exchanger, putative [Ricinus communis]
10 Hb_001623_070 0.2585852458 - - cytochrome B5 isoform 1, putative [Ricinus communis]
11 Hb_042871_010 0.2662994011 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
12 Hb_008609_030 0.2688669353 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_000164_060 0.2709303657 - - -
14 Hb_001401_100 0.275537529 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
15 Hb_003732_040 0.279176186 - - putative esterase family protein [Populus trichocarpa]
16 Hb_000622_070 0.2823316901 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000622_080 0.2838195553 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
18 Hb_000622_320 0.2898030585 - - PREDICTED: chitinase 1-like [Vitis vinifera]
19 Hb_012573_010 0.2937361948 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]
20 Hb_014497_080 0.294757524 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]

Gene co-expression network

sample Hb_002890_080 Hb_002890_080 Hb_001439_090 Hb_001439_090 Hb_002890_080--Hb_001439_090 Hb_024650_040 Hb_024650_040 Hb_002890_080--Hb_024650_040 Hb_015057_030 Hb_015057_030 Hb_002890_080--Hb_015057_030 Hb_006469_120 Hb_006469_120 Hb_002890_080--Hb_006469_120 Hb_002890_070 Hb_002890_070 Hb_002890_080--Hb_002890_070 Hb_051067_010 Hb_051067_010 Hb_002890_080--Hb_051067_010 Hb_001623_070 Hb_001623_070 Hb_001439_090--Hb_001623_070 Hb_103739_010 Hb_103739_010 Hb_001439_090--Hb_103739_010 Hb_001439_090--Hb_006469_120 Hb_001439_090--Hb_024650_040 Hb_001439_090--Hb_002890_070 Hb_024650_040--Hb_002890_070 Hb_002908_070 Hb_002908_070 Hb_024650_040--Hb_002908_070 Hb_000622_320 Hb_000622_320 Hb_024650_040--Hb_000622_320 Hb_005772_010 Hb_005772_010 Hb_024650_040--Hb_005772_010 Hb_001892_090 Hb_001892_090 Hb_015057_030--Hb_001892_090 Hb_006277_070 Hb_006277_070 Hb_015057_030--Hb_006277_070 Hb_000622_070 Hb_000622_070 Hb_015057_030--Hb_000622_070 Hb_015057_030--Hb_051067_010 Hb_000016_070 Hb_000016_070 Hb_015057_030--Hb_000016_070 Hb_014497_080 Hb_014497_080 Hb_006469_120--Hb_014497_080 Hb_006469_120--Hb_051067_010 Hb_000062_300 Hb_000062_300 Hb_006469_120--Hb_000062_300 Hb_003732_040 Hb_003732_040 Hb_006469_120--Hb_003732_040 Hb_002890_070--Hb_001623_070 Hb_002890_070--Hb_006277_070 Hb_012573_010 Hb_012573_010 Hb_002890_070--Hb_012573_010 Hb_002890_070--Hb_003732_040 Hb_051067_010--Hb_006277_070 Hb_147793_010 Hb_147793_010 Hb_051067_010--Hb_147793_010 Hb_023661_060 Hb_023661_060 Hb_051067_010--Hb_023661_060 Hb_000002_170 Hb_000002_170 Hb_051067_010--Hb_000002_170 Hb_034661_020 Hb_034661_020 Hb_051067_010--Hb_034661_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.238395 0.224186 2.41686 7.33265 0.0582108 0.248474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.14517 39.457 0.191249 1.42894 0.84346

CAGE analysis