Hb_002890_110

Information

Type -
Description -
Location Contig2890: 192996-196455
Sequence    

Annotation

kegg
ID pop:POPTR_0003s00860g
description proton-dependent oligopeptide transport family protein
nr
ID XP_012066760.1
description PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
swissprot
ID Q93VV5
description Protein NRT1/ PTR FAMILY 4.3 OS=Arabidopsis thaliana GN=NPF4.3 PE=2 SV=1
trembl
ID A0A067L250
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00309 PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30198: 193093-196475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_110 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
2 Hb_001269_580 0.102090859 - - PREDICTED: shikimate O-hydroxycinnamoyltransferase [Jatropha curcas]
3 Hb_011224_150 0.1149262321 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
4 Hb_000392_540 0.121852802 - - PREDICTED: hypersensitive-induced response protein 1 [Sesamum indicum]
5 Hb_009122_010 0.1241339538 - - o-methyltransferase, putative [Ricinus communis]
6 Hb_142056_010 0.125287938 - - PREDICTED: MATE efflux family protein 1 isoform X2 [Jatropha curcas]
7 Hb_002750_040 0.1283280423 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
8 Hb_001360_020 0.1297614834 - - PREDICTED: S-adenosylmethionine synthase 1 [Nelumbo nucifera]
9 Hb_001410_080 0.129911054 - - ring finger protein, putative [Ricinus communis]
10 Hb_000103_300 0.1338514676 - - PREDICTED: perakine reductase-like [Jatropha curcas]
11 Hb_001268_290 0.138660737 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
12 Hb_005391_050 0.1388084538 - - PREDICTED: uncharacterized protein LOC105643654 [Jatropha curcas]
13 Hb_004117_020 0.1394292162 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005329_030 0.1402128899 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
15 Hb_001976_100 0.1412803856 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
16 Hb_113766_010 0.141672981 - - plasma membrane H+ ATPase, partial [Nicotiana plumbaginifolia]
17 Hb_174541_030 0.1418847833 - - Cytochrome P450, family 98, subfamily A, polypeptide 3 [Theobroma cacao]
18 Hb_002391_240 0.1434114976 - - conserved hypothetical protein [Ricinus communis]
19 Hb_026198_020 0.1435614037 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
20 Hb_023308_010 0.1485057148 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_002890_110 Hb_002890_110 Hb_001269_580 Hb_001269_580 Hb_002890_110--Hb_001269_580 Hb_011224_150 Hb_011224_150 Hb_002890_110--Hb_011224_150 Hb_000392_540 Hb_000392_540 Hb_002890_110--Hb_000392_540 Hb_009122_010 Hb_009122_010 Hb_002890_110--Hb_009122_010 Hb_142056_010 Hb_142056_010 Hb_002890_110--Hb_142056_010 Hb_002750_040 Hb_002750_040 Hb_002890_110--Hb_002750_040 Hb_001269_580--Hb_009122_010 Hb_001269_580--Hb_002750_040 Hb_004117_020 Hb_004117_020 Hb_001269_580--Hb_004117_020 Hb_174541_030 Hb_174541_030 Hb_001269_580--Hb_174541_030 Hb_002203_020 Hb_002203_020 Hb_001269_580--Hb_002203_020 Hb_011224_150--Hb_000392_540 Hb_000080_100 Hb_000080_100 Hb_011224_150--Hb_000080_100 Hb_000856_030 Hb_000856_030 Hb_011224_150--Hb_000856_030 Hb_000367_080 Hb_000367_080 Hb_011224_150--Hb_000367_080 Hb_000009_250 Hb_000009_250 Hb_011224_150--Hb_000009_250 Hb_010968_030 Hb_010968_030 Hb_000392_540--Hb_010968_030 Hb_000251_120 Hb_000251_120 Hb_000392_540--Hb_000251_120 Hb_000392_540--Hb_000367_080 Hb_004957_050 Hb_004957_050 Hb_000392_540--Hb_004957_050 Hb_002374_510 Hb_002374_510 Hb_009122_010--Hb_002374_510 Hb_001410_080 Hb_001410_080 Hb_009122_010--Hb_001410_080 Hb_008304_050 Hb_008304_050 Hb_009122_010--Hb_008304_050 Hb_009122_010--Hb_002750_040 Hb_113766_010 Hb_113766_010 Hb_009122_010--Hb_113766_010 Hb_002000_100 Hb_002000_100 Hb_142056_010--Hb_002000_100 Hb_001360_020 Hb_001360_020 Hb_142056_010--Hb_001360_020 Hb_002007_330 Hb_002007_330 Hb_142056_010--Hb_002007_330 Hb_005391_050 Hb_005391_050 Hb_142056_010--Hb_005391_050 Hb_000453_290 Hb_000453_290 Hb_142056_010--Hb_000453_290 Hb_002384_030 Hb_002384_030 Hb_142056_010--Hb_002384_030 Hb_026198_020 Hb_026198_020 Hb_002750_040--Hb_026198_020 Hb_002750_040--Hb_113766_010 Hb_001404_070 Hb_001404_070 Hb_002750_040--Hb_001404_070 Hb_002391_240 Hb_002391_240 Hb_002750_040--Hb_002391_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.32708 0.868132 9.39709 0.00985716 0.0283756
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0223698 0.0352026 0.267078 1.89755 4.53921

CAGE analysis