Hb_002890_140

Information

Type -
Description -
Location Contig2890: 225110-228936
Sequence    

Annotation

kegg
ID vvi:100263805
description uncharacterized LOC100263805
nr
ID XP_002279055.2
description PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
swissprot
ID Q5SLQ0
description 30S ribosomal protein S18 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rpsR PE=1 SV=3
trembl
ID D7SJX0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g06690 PE=3 SV=1
Gene Ontology
ID GO:0030529
description structural constituent of

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30206: 225054-228858
cDNA
(Sanger)
(ID:Location)		 017_N11.ab1: 226157-228849

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_140 0.0 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
2 Hb_000815_040 0.0504442415 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
3 Hb_000103_090 0.0534117683 - - PREDICTED: protein RDM1 [Jatropha curcas]
4 Hb_000103_560 0.0612044815 - - ADP-ribosylation factor, putative [Ricinus communis]
5 Hb_000529_190 0.0704479902 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
6 Hb_033834_040 0.071263452 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000832_140 0.0743185908 - - actin depolymerizing factor 4 [Hevea brasiliensis]
8 Hb_010180_010 0.0750148632 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
9 Hb_002214_040 0.0758120004 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
10 Hb_000116_440 0.0769974784 - - PREDICTED: eukaryotic translation initiation factor 6-2 [Jatropha curcas]
11 Hb_003266_050 0.078402684 - - PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]
12 Hb_128048_010 0.078516316 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
13 Hb_024071_020 0.0788146784 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
14 Hb_118707_030 0.0796397526 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
15 Hb_001140_370 0.0804250791 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
16 Hb_000007_100 0.080848229 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
17 Hb_000329_030 0.0809397797 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
18 Hb_001604_080 0.0810302566 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
19 Hb_003599_040 0.0811642992 - - unnamed protein product [Vitis vinifera]
20 Hb_004128_190 0.0813931268 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]

Gene co-expression network

sample Hb_002890_140 Hb_002890_140 Hb_000815_040 Hb_000815_040 Hb_002890_140--Hb_000815_040 Hb_000103_090 Hb_000103_090 Hb_002890_140--Hb_000103_090 Hb_000103_560 Hb_000103_560 Hb_002890_140--Hb_000103_560 Hb_000529_190 Hb_000529_190 Hb_002890_140--Hb_000529_190 Hb_033834_040 Hb_033834_040 Hb_002890_140--Hb_033834_040 Hb_000832_140 Hb_000832_140 Hb_002890_140--Hb_000832_140 Hb_001604_080 Hb_001604_080 Hb_000815_040--Hb_001604_080 Hb_000815_040--Hb_000103_560 Hb_002214_040 Hb_002214_040 Hb_000815_040--Hb_002214_040 Hb_000815_040--Hb_000529_190 Hb_118707_030 Hb_118707_030 Hb_000815_040--Hb_118707_030 Hb_000103_090--Hb_033834_040 Hb_032717_080 Hb_032717_080 Hb_000103_090--Hb_032717_080 Hb_004128_190 Hb_004128_190 Hb_000103_090--Hb_004128_190 Hb_002477_330 Hb_002477_330 Hb_000103_090--Hb_002477_330 Hb_000103_090--Hb_000529_190 Hb_063716_050 Hb_063716_050 Hb_000103_560--Hb_063716_050 Hb_000103_560--Hb_000832_140 Hb_000103_560--Hb_001604_080 Hb_002078_150 Hb_002078_150 Hb_000103_560--Hb_002078_150 Hb_000103_560--Hb_000529_190 Hb_000529_190--Hb_002214_040 Hb_000529_190--Hb_063716_050 Hb_001789_070 Hb_001789_070 Hb_000529_190--Hb_001789_070 Hb_000529_190--Hb_001604_080 Hb_000529_190--Hb_000832_140 Hb_002226_070 Hb_002226_070 Hb_033834_040--Hb_002226_070 Hb_000926_250 Hb_000926_250 Hb_033834_040--Hb_000926_250 Hb_004032_010 Hb_004032_010 Hb_033834_040--Hb_004032_010 Hb_002183_090 Hb_002183_090 Hb_033834_040--Hb_002183_090 Hb_159809_020 Hb_159809_020 Hb_033834_040--Hb_159809_020 Hb_000174_090 Hb_000174_090 Hb_000832_140--Hb_000174_090 Hb_000832_140--Hb_002214_040 Hb_003050_080 Hb_003050_080 Hb_000832_140--Hb_003050_080 Hb_000832_140--Hb_063716_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.437 12.4861 16.3402 26.3137 30.2986 45.2772
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.3914 58.3443 26.031 25.8516 16.4288

CAGE analysis