Hb_002890_200

Information

Type -
Description -
Location Contig2890: 294207-304642
Sequence    

Annotation

kegg
ID rcu:RCOM_0825000
description Methionine S-methyltransferase, putative (EC:2.1.1.12)
nr
ID XP_012069132.1
description PREDICTED: methionine S-methyltransferase [Jatropha curcas]
swissprot
ID Q9LTB2
description Methionine S-methyltransferase OS=Arabidopsis thaliana GN=MMT1 PE=1 SV=1
trembl
ID A0A067L0Y5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24897 PE=4 SV=1
Gene Ontology
ID GO:0005829
description methionine s-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30214: 293989-302664 , PASA_asmbl_30215: 304548-304680
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_200 0.0 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
2 Hb_000703_120 0.0668564188 - - PREDICTED: uncharacterized protein LOC105635706 isoform X1 [Jatropha curcas]
3 Hb_000627_050 0.0816613103 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
4 Hb_009788_020 0.0865717517 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Jatropha curcas]
5 Hb_002822_010 0.0887363817 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
6 Hb_004855_080 0.0890127052 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
7 Hb_001488_420 0.0933490997 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
8 Hb_000212_410 0.0939594992 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
9 Hb_000318_010 0.0949534908 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
10 Hb_002724_010 0.0970916115 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Citrus sinensis]
11 Hb_000023_130 0.1024787339 - - Metal-nicotianamine transporter YSL1 [Glycine soja]
12 Hb_004946_010 0.105816057 - - hypothetical protein POPTR_0013s035502g, partial [Populus trichocarpa]
13 Hb_069696_020 0.1058546125 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
14 Hb_001405_040 0.1068609834 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
15 Hb_003145_010 0.110023691 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
16 Hb_131876_010 0.1102762297 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like isoform X1 [Jatropha curcas]
17 Hb_004116_050 0.11110776 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
18 Hb_000416_090 0.1135414124 - - Aquaporin NIP1.1, putative [Ricinus communis]
19 Hb_000008_150 0.1147004018 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
20 Hb_000901_010 0.1163356423 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Jatropha curcas]

Gene co-expression network

sample Hb_002890_200 Hb_002890_200 Hb_000703_120 Hb_000703_120 Hb_002890_200--Hb_000703_120 Hb_000627_050 Hb_000627_050 Hb_002890_200--Hb_000627_050 Hb_009788_020 Hb_009788_020 Hb_002890_200--Hb_009788_020 Hb_002822_010 Hb_002822_010 Hb_002890_200--Hb_002822_010 Hb_004855_080 Hb_004855_080 Hb_002890_200--Hb_004855_080 Hb_001488_420 Hb_001488_420 Hb_002890_200--Hb_001488_420 Hb_000703_120--Hb_000627_050 Hb_000703_120--Hb_009788_020 Hb_000212_410 Hb_000212_410 Hb_000703_120--Hb_000212_410 Hb_002724_010 Hb_002724_010 Hb_000703_120--Hb_002724_010 Hb_007270_020 Hb_007270_020 Hb_000703_120--Hb_007270_020 Hb_000627_050--Hb_000212_410 Hb_000627_050--Hb_009788_020 Hb_000627_050--Hb_007270_020 Hb_069696_020 Hb_069696_020 Hb_000627_050--Hb_069696_020 Hb_000977_020 Hb_000977_020 Hb_000627_050--Hb_000977_020 Hb_009788_020--Hb_000212_410 Hb_009788_020--Hb_007270_020 Hb_060253_010 Hb_060253_010 Hb_009788_020--Hb_060253_010 Hb_009788_020--Hb_001488_420 Hb_002822_010--Hb_001488_420 Hb_002822_010--Hb_009788_020 Hb_002822_010--Hb_004855_080 Hb_003938_230 Hb_003938_230 Hb_002822_010--Hb_003938_230 Hb_002822_010--Hb_000703_120 Hb_000008_150 Hb_000008_150 Hb_004855_080--Hb_000008_150 Hb_004855_080--Hb_001488_420 Hb_001405_040 Hb_001405_040 Hb_004855_080--Hb_001405_040 Hb_000759_040 Hb_000759_040 Hb_004855_080--Hb_000759_040 Hb_003506_010 Hb_003506_010 Hb_004855_080--Hb_003506_010 Hb_004602_010 Hb_004602_010 Hb_004855_080--Hb_004602_010 Hb_001488_420--Hb_000008_150 Hb_001488_420--Hb_000759_040 Hb_004218_140 Hb_004218_140 Hb_001488_420--Hb_004218_140 Hb_001488_420--Hb_003506_010 Hb_001488_420--Hb_004602_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.17536 5.85395 4.32756 0.104059 0.03105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0102894 0.078854 1.70903 6.66323

CAGE analysis