Hb_002890_220

Information

Type -
Description -
Location Contig2890: 313812-320745
Sequence    

Annotation

kegg
ID rcu:RCOM_0824990
description virion binding protein, putative
nr
ID KDP40900.1
description hypothetical protein JCGZ_24899 [Jatropha curcas]
swissprot
ID Q402F4
description Tobamovirus multiplication protein 1 OS=Nicotiana tabacum GN=TOM1 PE=1 SV=1
trembl
ID A0A067L8S5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24899 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30218: 313779-320918 , PASA_asmbl_30219: 314761-320885
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_220 0.0 - - hypothetical protein JCGZ_24899 [Jatropha curcas]
2 Hb_002374_340 0.0680576563 - - Two-component response regulator ARR9, putative [Ricinus communis]
3 Hb_000264_190 0.0824186488 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
4 Hb_017134_040 0.089948357 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]
5 Hb_002609_260 0.0998913178 - - CCCH-type zinc finger protein [Hevea brasiliensis]
6 Hb_010931_100 0.1010680869 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
7 Hb_005730_020 0.1028648378 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
8 Hb_000771_140 0.104779862 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
9 Hb_000563_540 0.1066884255 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
10 Hb_002298_040 0.1076230535 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
11 Hb_009510_030 0.1103576788 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
12 Hb_114684_020 0.1131478768 - - beta-1,3-glucanase [Hevea brasiliensis]
13 Hb_005245_090 0.1139605583 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
14 Hb_000442_030 0.1155200729 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000304_020 0.1194331729 - - beta-1,3-glucanase form RRII Gln 3 [Hevea brasiliensis]
16 Hb_002506_010 0.1213790451 - - choline transporter-related family protein [Populus trichocarpa]
17 Hb_003001_030 0.1215824024 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
18 Hb_009662_030 0.1244730456 - - hypothetical protein JCGZ_15748 [Jatropha curcas]
19 Hb_000849_040 0.1250367362 - - transcription factor, putative [Ricinus communis]
20 Hb_007317_220 0.1253456432 - - hypothetical protein JCGZ_12701 [Jatropha curcas]

Gene co-expression network

sample Hb_002890_220 Hb_002890_220 Hb_002374_340 Hb_002374_340 Hb_002890_220--Hb_002374_340 Hb_000264_190 Hb_000264_190 Hb_002890_220--Hb_000264_190 Hb_017134_040 Hb_017134_040 Hb_002890_220--Hb_017134_040 Hb_002609_260 Hb_002609_260 Hb_002890_220--Hb_002609_260 Hb_010931_100 Hb_010931_100 Hb_002890_220--Hb_010931_100 Hb_005730_020 Hb_005730_020 Hb_002890_220--Hb_005730_020 Hb_002942_030 Hb_002942_030 Hb_002374_340--Hb_002942_030 Hb_002374_340--Hb_017134_040 Hb_005245_090 Hb_005245_090 Hb_002374_340--Hb_005245_090 Hb_007317_220 Hb_007317_220 Hb_002374_340--Hb_007317_220 Hb_000771_140 Hb_000771_140 Hb_002374_340--Hb_000771_140 Hb_000264_190--Hb_002609_260 Hb_000264_190--Hb_010931_100 Hb_000563_540 Hb_000563_540 Hb_000264_190--Hb_000563_540 Hb_000264_190--Hb_005730_020 Hb_009510_030 Hb_009510_030 Hb_000264_190--Hb_009510_030 Hb_017134_040--Hb_005730_020 Hb_000329_610 Hb_000329_610 Hb_017134_040--Hb_000329_610 Hb_007178_010 Hb_007178_010 Hb_017134_040--Hb_007178_010 Hb_005063_010 Hb_005063_010 Hb_017134_040--Hb_005063_010 Hb_003786_110 Hb_003786_110 Hb_017134_040--Hb_003786_110 Hb_002609_260--Hb_010931_100 Hb_002609_260--Hb_005730_020 Hb_005488_100 Hb_005488_100 Hb_002609_260--Hb_005488_100 Hb_027751_020 Hb_027751_020 Hb_002609_260--Hb_027751_020 Hb_002609_260--Hb_000563_540 Hb_004545_150 Hb_004545_150 Hb_010931_100--Hb_004545_150 Hb_010931_100--Hb_000563_540 Hb_010931_100--Hb_005488_100 Hb_010931_100--Hb_027751_020 Hb_005730_020--Hb_009510_030 Hb_003001_030 Hb_003001_030 Hb_005730_020--Hb_003001_030 Hb_005730_020--Hb_010931_100 Hb_005730_020--Hb_000563_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
112.849 3.20872 1.49473 6.06529 146.019 96.9064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
138.863 68.7026 96.3998 11.9841 1.01386

CAGE analysis