Hb_002890_260

Information

Type -
Description -
Location Contig2890: 328801-329037
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0016747
description 3 -n-debenzoyl-2 -deoxytaxol n-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_260 0.0 - - -
2 Hb_000369_090 0.1701426116 - - -
3 Hb_000603_220 0.1810783616 - - PREDICTED: MADS-box transcription factor 23 [Jatropha curcas]
4 Hb_004025_030 0.1876790275 - - -
5 Hb_000184_120 0.1892988209 - - hypothetical protein JCGZ_18526 [Jatropha curcas]
6 Hb_043061_010 0.1895823252 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
7 Hb_033448_010 0.197737642 - - hypothetical protein JCGZ_19772 [Jatropha curcas]
8 Hb_000330_170 0.1978566919 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
9 Hb_134789_010 0.1989468306 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
10 Hb_002400_090 0.2005968728 - - -
11 Hb_001488_110 0.204281821 - - -
12 Hb_002200_120 0.2053137103 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001792_080 0.2056465194 - - unknown [Populus trichocarpa]
14 Hb_000563_530 0.2117030867 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
15 Hb_007317_220 0.2143752758 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
16 Hb_008557_020 0.2212784116 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
17 Hb_000831_060 0.2251148985 - - 17.5 kd heat shock family protein [Populus trichocarpa]
18 Hb_008725_200 0.226811389 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
19 Hb_000122_030 0.2303840333 - - PREDICTED: uncharacterized protein LOC104606081, partial [Nelumbo nucifera]
20 Hb_077562_040 0.2318771982 - - hypothetical protein JCGZ_24573 [Jatropha curcas]

Gene co-expression network

sample Hb_002890_260 Hb_002890_260 Hb_000369_090 Hb_000369_090 Hb_002890_260--Hb_000369_090 Hb_000603_220 Hb_000603_220 Hb_002890_260--Hb_000603_220 Hb_004025_030 Hb_004025_030 Hb_002890_260--Hb_004025_030 Hb_000184_120 Hb_000184_120 Hb_002890_260--Hb_000184_120 Hb_043061_010 Hb_043061_010 Hb_002890_260--Hb_043061_010 Hb_033448_010 Hb_033448_010 Hb_002890_260--Hb_033448_010 Hb_000369_090--Hb_033448_010 Hb_000563_530 Hb_000563_530 Hb_000369_090--Hb_000563_530 Hb_002200_120 Hb_002200_120 Hb_000369_090--Hb_002200_120 Hb_000330_170 Hb_000330_170 Hb_000369_090--Hb_000330_170 Hb_000369_090--Hb_000184_120 Hb_180992_010 Hb_180992_010 Hb_000369_090--Hb_180992_010 Hb_000603_220--Hb_000330_170 Hb_007317_220 Hb_007317_220 Hb_000603_220--Hb_007317_220 Hb_005063_010 Hb_005063_010 Hb_000603_220--Hb_005063_010 Hb_000603_220--Hb_033448_010 Hb_000603_220--Hb_002200_120 Hb_000603_220--Hb_000369_090 Hb_077562_040 Hb_077562_040 Hb_004025_030--Hb_077562_040 Hb_004025_030--Hb_000184_120 Hb_023675_010 Hb_023675_010 Hb_004025_030--Hb_023675_010 Hb_004025_030--Hb_000563_530 Hb_004375_060 Hb_004375_060 Hb_004025_030--Hb_004375_060 Hb_027445_060 Hb_027445_060 Hb_004025_030--Hb_027445_060 Hb_000184_120--Hb_077562_040 Hb_000184_120--Hb_002200_120 Hb_000184_120--Hb_000563_530 Hb_000184_120--Hb_033448_010 Hb_115919_020 Hb_115919_020 Hb_043061_010--Hb_115919_020 Hb_001892_150 Hb_001892_150 Hb_043061_010--Hb_001892_150 Hb_000284_010 Hb_000284_010 Hb_043061_010--Hb_000284_010 Hb_000444_030 Hb_000444_030 Hb_043061_010--Hb_000444_030 Hb_134789_010 Hb_134789_010 Hb_043061_010--Hb_134789_010 Hb_000184_180 Hb_000184_180 Hb_043061_010--Hb_000184_180 Hb_033448_010--Hb_000563_530 Hb_033448_010--Hb_002200_120 Hb_000189_530 Hb_000189_530 Hb_033448_010--Hb_000189_530 Hb_000366_100 Hb_000366_100 Hb_033448_010--Hb_000366_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.54442 0 0 0 1.78377 3.76182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.24056 2.97339 1.45645 0 0

CAGE analysis