Hb_002890_280

Information

Type -
Description -
Location Contig2890: 330053-334010
Sequence    

Annotation

kegg
ID pmum:103336120
description probable protein phosphatase 2C 9
nr
ID XP_007201875.1
description hypothetical protein PRUPE_ppa009665mg [Prunus persica]
swissprot
ID Q9S9Z7
description Probable protein phosphatase 2C 10 OS=Arabidopsis thaliana GN=At1g34750 PE=2 SV=1
trembl
ID M5VPA7
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009665mg PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable protein phosphatase 2c 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30220: 330246-333996
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_280 0.0 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
2 Hb_000975_290 0.0606453365 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
3 Hb_007672_010 0.0784622421 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
4 Hb_001157_030 0.0830978348 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Jatropha curcas]
5 Hb_005062_070 0.0874995265 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
6 Hb_009382_020 0.0879230406 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
7 Hb_000754_060 0.0881045714 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
8 Hb_010381_070 0.0893197946 - - PREDICTED: protein STU1-like [Jatropha curcas]
9 Hb_000554_020 0.0907674445 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
10 Hb_000329_040 0.0918906639 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
11 Hb_178968_110 0.09273677 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
12 Hb_008453_090 0.093450958 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
13 Hb_001671_020 0.0942294828 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
14 Hb_024835_030 0.0943667264 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
15 Hb_000853_110 0.0953868337 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
16 Hb_000056_100 0.0953880269 - - PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
17 Hb_001243_050 0.0954516252 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
18 Hb_000376_050 0.0955835649 - - polyadenylate-binding protein, putative [Ricinus communis]
19 Hb_002794_030 0.09655147 - - hypothetical protein JCGZ_20185 [Jatropha curcas]
20 Hb_000190_140 0.0965752945 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002890_280 Hb_002890_280 Hb_000975_290 Hb_000975_290 Hb_002890_280--Hb_000975_290 Hb_007672_010 Hb_007672_010 Hb_002890_280--Hb_007672_010 Hb_001157_030 Hb_001157_030 Hb_002890_280--Hb_001157_030 Hb_005062_070 Hb_005062_070 Hb_002890_280--Hb_005062_070 Hb_009382_020 Hb_009382_020 Hb_002890_280--Hb_009382_020 Hb_000754_060 Hb_000754_060 Hb_002890_280--Hb_000754_060 Hb_133271_020 Hb_133271_020 Hb_000975_290--Hb_133271_020 Hb_158092_070 Hb_158092_070 Hb_000975_290--Hb_158092_070 Hb_001030_120 Hb_001030_120 Hb_000975_290--Hb_001030_120 Hb_002686_270 Hb_002686_270 Hb_000975_290--Hb_002686_270 Hb_071736_020 Hb_071736_020 Hb_000975_290--Hb_071736_020 Hb_007101_130 Hb_007101_130 Hb_007672_010--Hb_007101_130 Hb_000376_050 Hb_000376_050 Hb_007672_010--Hb_000376_050 Hb_021650_030 Hb_021650_030 Hb_007672_010--Hb_021650_030 Hb_000056_340 Hb_000056_340 Hb_007672_010--Hb_000056_340 Hb_002078_450 Hb_002078_450 Hb_007672_010--Hb_002078_450 Hb_001157_030--Hb_009382_020 Hb_003861_080 Hb_003861_080 Hb_001157_030--Hb_003861_080 Hb_001981_090 Hb_001981_090 Hb_001157_030--Hb_001981_090 Hb_000805_090 Hb_000805_090 Hb_001157_030--Hb_000805_090 Hb_006501_040 Hb_006501_040 Hb_001157_030--Hb_006501_040 Hb_001454_210 Hb_001454_210 Hb_005062_070--Hb_001454_210 Hb_005062_070--Hb_001030_120 Hb_004046_010 Hb_004046_010 Hb_005062_070--Hb_004046_010 Hb_000030_010 Hb_000030_010 Hb_005062_070--Hb_000030_010 Hb_000190_140 Hb_000190_140 Hb_005062_070--Hb_000190_140 Hb_009111_050 Hb_009111_050 Hb_005062_070--Hb_009111_050 Hb_000300_620 Hb_000300_620 Hb_009382_020--Hb_000300_620 Hb_000138_040 Hb_000138_040 Hb_009382_020--Hb_000138_040 Hb_000483_350 Hb_000483_350 Hb_009382_020--Hb_000483_350 Hb_009382_020--Hb_005062_070 Hb_000754_060--Hb_000190_140 Hb_000120_950 Hb_000120_950 Hb_000754_060--Hb_000120_950 Hb_002477_160 Hb_002477_160 Hb_000754_060--Hb_002477_160 Hb_007951_050 Hb_007951_050 Hb_000754_060--Hb_007951_050 Hb_010381_070 Hb_010381_070 Hb_000754_060--Hb_010381_070 Hb_000554_020 Hb_000554_020 Hb_000754_060--Hb_000554_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
150.21 49.888 21.03 28.1187 75.1626 116.064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
115.199 135.709 153.606 47.6691 15.4889

CAGE analysis