Hb_002890_330

Information

Type -
Description -
Location Contig2890: 385219-396621
Sequence    

Annotation

kegg
ID rcu:RCOM_0824500
description caspase, putative
nr
ID XP_002525857.1
description caspase, putative [Ricinus communis]
swissprot
ID Q7XJE6
description Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1
trembl
ID B9SIN8
description Caspase, putative OS=Ricinus communis GN=RCOM_0824500 PE=4 SV=1
Gene Ontology
ID GO:0004197
description metacaspase-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30228: 385159-388970 , PASA_asmbl_30229: 388981-389586
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_330 0.0 - - caspase, putative [Ricinus communis]
2 Hb_002053_190 0.0624274711 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
3 Hb_002043_070 0.082494179 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
4 Hb_001541_210 0.086160999 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
5 Hb_002960_030 0.0898072925 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
6 Hb_001405_170 0.0984073005 - - aspartyl protease family protein [Populus trichocarpa]
7 Hb_009222_040 0.0994187823 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
8 Hb_005741_030 0.102154987 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
9 Hb_007101_070 0.102833308 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
10 Hb_003399_110 0.1072096188 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002168_070 0.1085126943 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
12 Hb_002762_100 0.1100604403 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_103225_030 0.1101013005 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
14 Hb_002534_070 0.1151669528 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
15 Hb_009785_030 0.1153271635 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
16 Hb_000827_020 0.118989404 - - unnamed protein product [Coffea canephora]
17 Hb_000020_210 0.1202014604 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
18 Hb_003893_130 0.120670801 - - metal ion binding protein, putative [Ricinus communis]
19 Hb_004223_240 0.1222943678 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
20 Hb_003023_030 0.1256566258 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_002890_330 Hb_002890_330 Hb_002053_190 Hb_002053_190 Hb_002890_330--Hb_002053_190 Hb_002043_070 Hb_002043_070 Hb_002890_330--Hb_002043_070 Hb_001541_210 Hb_001541_210 Hb_002890_330--Hb_001541_210 Hb_002960_030 Hb_002960_030 Hb_002890_330--Hb_002960_030 Hb_001405_170 Hb_001405_170 Hb_002890_330--Hb_001405_170 Hb_009222_040 Hb_009222_040 Hb_002890_330--Hb_009222_040 Hb_002053_190--Hb_002043_070 Hb_002053_190--Hb_001405_170 Hb_002053_190--Hb_002960_030 Hb_002168_070 Hb_002168_070 Hb_002053_190--Hb_002168_070 Hb_002053_190--Hb_001541_210 Hb_002043_070--Hb_002168_070 Hb_005211_210 Hb_005211_210 Hb_002043_070--Hb_005211_210 Hb_000434_060 Hb_000434_060 Hb_002043_070--Hb_000434_060 Hb_009771_040 Hb_009771_040 Hb_002043_070--Hb_009771_040 Hb_001541_210--Hb_001405_170 Hb_001541_210--Hb_002960_030 Hb_005741_030 Hb_005741_030 Hb_001541_210--Hb_005741_030 Hb_001541_210--Hb_002043_070 Hb_002960_030--Hb_001405_170 Hb_002534_070 Hb_002534_070 Hb_002960_030--Hb_002534_070 Hb_000983_130 Hb_000983_130 Hb_002960_030--Hb_000983_130 Hb_081864_010 Hb_081864_010 Hb_001405_170--Hb_081864_010 Hb_001405_170--Hb_009771_040 Hb_001405_170--Hb_002168_070 Hb_000020_210 Hb_000020_210 Hb_009222_040--Hb_000020_210 Hb_001477_060 Hb_001477_060 Hb_009222_040--Hb_001477_060 Hb_009222_040--Hb_001405_170 Hb_009222_040--Hb_002053_190 Hb_001427_100 Hb_001427_100 Hb_009222_040--Hb_001427_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0694407 3.40231 2.81289 8.44635 0.237847 0.0610637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.148755 3.9018

CAGE analysis