Hb_002890_340

Information

Type -
Description -
Location Contig2890: 400511-404537
Sequence    

Annotation

kegg
ID rcu:RCOM_0824380
description hypothetical protein
nr
ID XP_012069143.1
description PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L0Z5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24907 PE=4 SV=1
Gene Ontology
ID GO:0003677
description methyl-cpg-binding domain isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30231: 400370-401285 , PASA_asmbl_30232: 401303-403996 , PASA_asmbl_30233: 402370-402547
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_340 0.0 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
2 Hb_000421_260 0.0474607136 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
3 Hb_015306_020 0.0581582933 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
4 Hb_002039_010 0.0628864191 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
5 Hb_004046_010 0.0661386338 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
6 Hb_001720_050 0.0704409951 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
7 Hb_009111_050 0.0734013216 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
8 Hb_001454_210 0.0795858619 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
9 Hb_005062_070 0.0825426919 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
10 Hb_001030_120 0.0826342576 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
11 Hb_000152_820 0.0827596493 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
12 Hb_011918_080 0.0836737348 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
13 Hb_003581_140 0.0861618533 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
14 Hb_033642_010 0.0864406921 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
15 Hb_004600_040 0.0867145395 - - -
16 Hb_010710_010 0.0868907142 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
17 Hb_000418_100 0.0870855677 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
18 Hb_000608_120 0.0871313488 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
19 Hb_001017_040 0.0878798862 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
20 Hb_000538_200 0.0880666192 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Jatropha curcas]

Gene co-expression network

sample Hb_002890_340 Hb_002890_340 Hb_000421_260 Hb_000421_260 Hb_002890_340--Hb_000421_260 Hb_015306_020 Hb_015306_020 Hb_002890_340--Hb_015306_020 Hb_002039_010 Hb_002039_010 Hb_002890_340--Hb_002039_010 Hb_004046_010 Hb_004046_010 Hb_002890_340--Hb_004046_010 Hb_001720_050 Hb_001720_050 Hb_002890_340--Hb_001720_050 Hb_009111_050 Hb_009111_050 Hb_002890_340--Hb_009111_050 Hb_000421_260--Hb_001720_050 Hb_007951_050 Hb_007951_050 Hb_000421_260--Hb_007951_050 Hb_005062_070 Hb_005062_070 Hb_000421_260--Hb_005062_070 Hb_004600_040 Hb_004600_040 Hb_000421_260--Hb_004600_040 Hb_000421_260--Hb_009111_050 Hb_001454_210 Hb_001454_210 Hb_015306_020--Hb_001454_210 Hb_028872_140 Hb_028872_140 Hb_015306_020--Hb_028872_140 Hb_001789_090 Hb_001789_090 Hb_015306_020--Hb_001789_090 Hb_015306_020--Hb_009111_050 Hb_015306_020--Hb_004046_010 Hb_004204_020 Hb_004204_020 Hb_002039_010--Hb_004204_020 Hb_004452_100 Hb_004452_100 Hb_002039_010--Hb_004452_100 Hb_000152_820 Hb_000152_820 Hb_002039_010--Hb_000152_820 Hb_000184_130 Hb_000184_130 Hb_002039_010--Hb_000184_130 Hb_002039_010--Hb_015306_020 Hb_004046_010--Hb_005062_070 Hb_002477_160 Hb_002477_160 Hb_004046_010--Hb_002477_160 Hb_011918_080 Hb_011918_080 Hb_004046_010--Hb_011918_080 Hb_000446_090 Hb_000446_090 Hb_004046_010--Hb_000446_090 Hb_003777_330 Hb_003777_330 Hb_001720_050--Hb_003777_330 Hb_000418_100 Hb_000418_100 Hb_001720_050--Hb_000418_100 Hb_033642_010 Hb_033642_010 Hb_001720_050--Hb_033642_010 Hb_001720_050--Hb_000152_820 Hb_009111_050--Hb_028872_140 Hb_009111_050--Hb_033642_010 Hb_001030_120 Hb_001030_120 Hb_009111_050--Hb_001030_120 Hb_009111_050--Hb_001454_210 Hb_000190_140 Hb_000190_140 Hb_009111_050--Hb_000190_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.9994 6.17404 2.28401 3.59845 18.075 23.2489
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4118 13.1286 19.8047 8.46143 5.32883

CAGE analysis