Hb_002890_400

Information

Type -
Description -
Location Contig2890: 437956-440577
Sequence    

Annotation

kegg
ID rcu:RCOM_0824180
description 2-nitropropane dioxygenase precursor, putative (EC:1.13.11.32)
nr
ID XP_002525846.1
description 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
swissprot
ID O05413
description Probable nitronate monooxygenase OS=Bacillus subtilis (strain 168) GN=yrpB PE=3 SV=1
trembl
ID B9SIM7
description 2-nitropropane dioxygenase, putative OS=Ricinus communis GN=RCOM_0824180 PE=4 SV=1
Gene Ontology
ID GO:0005829
description nitronate monooxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_400 0.0 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
2 Hb_010931_010 0.0902315284 - - PREDICTED: protein YLS9-like [Jatropha curcas]
3 Hb_001357_260 0.1102177879 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_112082_030 0.1202952213 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
5 Hb_000189_260 0.1218287722 - - conserved hypothetical protein [Ricinus communis]
6 Hb_009012_020 0.1267632874 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
7 Hb_000411_060 0.1272195011 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
8 Hb_000487_170 0.1349200641 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
9 Hb_000976_020 0.1351342033 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
10 Hb_001902_180 0.1361715376 - - PREDICTED: uncharacterized protein LOC105129658 [Populus euphratica]
11 Hb_002917_010 0.1366719094 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
12 Hb_000522_040 0.1383349274 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
13 Hb_002234_150 0.140046371 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
14 Hb_000046_060 0.1436690824 - - sugar transporter, putative [Ricinus communis]
15 Hb_064398_010 0.1439658355 - - cytochrome P450, putative [Ricinus communis]
16 Hb_001047_250 0.1458368919 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
17 Hb_001080_310 0.1469269343 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
18 Hb_004463_040 0.1483559225 - - -
19 Hb_006452_050 0.1489174384 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
20 Hb_021419_060 0.1518447606 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]

Gene co-expression network

sample Hb_002890_400 Hb_002890_400 Hb_010931_010 Hb_010931_010 Hb_002890_400--Hb_010931_010 Hb_001357_260 Hb_001357_260 Hb_002890_400--Hb_001357_260 Hb_112082_030 Hb_112082_030 Hb_002890_400--Hb_112082_030 Hb_000189_260 Hb_000189_260 Hb_002890_400--Hb_000189_260 Hb_009012_020 Hb_009012_020 Hb_002890_400--Hb_009012_020 Hb_000411_060 Hb_000411_060 Hb_002890_400--Hb_000411_060 Hb_010931_010--Hb_009012_020 Hb_000522_040 Hb_000522_040 Hb_010931_010--Hb_000522_040 Hb_004463_040 Hb_004463_040 Hb_010931_010--Hb_004463_040 Hb_000684_020 Hb_000684_020 Hb_010931_010--Hb_000684_020 Hb_001902_180 Hb_001902_180 Hb_010931_010--Hb_001902_180 Hb_001357_260--Hb_112082_030 Hb_002917_010 Hb_002917_010 Hb_001357_260--Hb_002917_010 Hb_000976_020 Hb_000976_020 Hb_001357_260--Hb_000976_020 Hb_002965_020 Hb_002965_020 Hb_001357_260--Hb_002965_020 Hb_004586_080 Hb_004586_080 Hb_001357_260--Hb_004586_080 Hb_000327_300 Hb_000327_300 Hb_001357_260--Hb_000327_300 Hb_112082_030--Hb_000189_260 Hb_112082_030--Hb_002917_010 Hb_008406_010 Hb_008406_010 Hb_112082_030--Hb_008406_010 Hb_005511_050 Hb_005511_050 Hb_112082_030--Hb_005511_050 Hb_020332_040 Hb_020332_040 Hb_000189_260--Hb_020332_040 Hb_000189_260--Hb_002917_010 Hb_000189_260--Hb_000976_020 Hb_012660_010 Hb_012660_010 Hb_000189_260--Hb_012660_010 Hb_000189_260--Hb_001357_260 Hb_002048_010 Hb_002048_010 Hb_000189_260--Hb_002048_010 Hb_009012_020--Hb_001902_180 Hb_000046_060 Hb_000046_060 Hb_009012_020--Hb_000046_060 Hb_110218_010 Hb_110218_010 Hb_009012_020--Hb_110218_010 Hb_009012_020--Hb_004463_040 Hb_009012_020--Hb_000684_020 Hb_009012_020--Hb_000411_060 Hb_000487_170 Hb_000487_170 Hb_000411_060--Hb_000487_170 Hb_000411_060--Hb_001902_180 Hb_000101_050 Hb_000101_050 Hb_000411_060--Hb_000101_050 Hb_008080_040 Hb_008080_040 Hb_000411_060--Hb_008080_040 Hb_000411_060--Hb_001357_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.16298 0.387059 0.253374 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.407227 0.0985773 0 14.7659 0.618618

CAGE analysis