Hb_002893_020

Information

Type -
Description -
Location Contig2893: 24925-31138
Sequence    

Annotation

kegg
ID rcu:RCOM_0724720
description S-locus-specific glycoprotein S13 precursor, putative (EC:2.7.11.25)
nr
ID KDP20848.1
description hypothetical protein JCGZ_21319 [Jatropha curcas]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID A0A067JDL4
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_21319 PE=3 SV=1
Gene Ontology
ID GO:0000166
description g-type lectin s-receptor-like serine threonine-protein kinase rks1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30255: 26960-28030
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002893_020 0.0 - - hypothetical protein JCGZ_21319 [Jatropha curcas]
2 Hb_000640_230 0.1072650628 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010222_030 0.1125761928 - - PREDICTED: uncharacterized protein LOC105647641 [Jatropha curcas]
4 Hb_024714_020 0.1177097233 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_000207_310 0.1195872363 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
6 Hb_178968_100 0.1203214759 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]
7 Hb_000028_610 0.1206702903 - - PREDICTED: uncharacterized protein LOC105644291 [Jatropha curcas]
8 Hb_004044_020 0.1211701423 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
9 Hb_000236_280 0.1218731609 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
10 Hb_022693_120 0.1231502671 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
11 Hb_004525_100 0.1239052293 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
12 Hb_000214_040 0.1246047158 - - conserved hypothetical protein [Ricinus communis]
13 Hb_108216_040 0.1255088718 - - PREDICTED: protein arginine N-methyltransferase 2 [Jatropha curcas]
14 Hb_000088_200 0.1267133504 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
15 Hb_000617_220 0.1275462298 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
16 Hb_003006_060 0.1299628417 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
17 Hb_000640_020 0.1303152715 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
18 Hb_003605_130 0.1310294773 - - PREDICTED: probable arabinosyltransferase ARAD1 [Populus euphratica]
19 Hb_003020_110 0.1312843558 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
20 Hb_000976_270 0.1322913702 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]

Gene co-expression network

sample Hb_002893_020 Hb_002893_020 Hb_000640_230 Hb_000640_230 Hb_002893_020--Hb_000640_230 Hb_010222_030 Hb_010222_030 Hb_002893_020--Hb_010222_030 Hb_024714_020 Hb_024714_020 Hb_002893_020--Hb_024714_020 Hb_000207_310 Hb_000207_310 Hb_002893_020--Hb_000207_310 Hb_178968_100 Hb_178968_100 Hb_002893_020--Hb_178968_100 Hb_000028_610 Hb_000028_610 Hb_002893_020--Hb_000028_610 Hb_004044_020 Hb_004044_020 Hb_000640_230--Hb_004044_020 Hb_003097_150 Hb_003097_150 Hb_000640_230--Hb_003097_150 Hb_002007_250 Hb_002007_250 Hb_000640_230--Hb_002007_250 Hb_010128_130 Hb_010128_130 Hb_000640_230--Hb_010128_130 Hb_000640_230--Hb_000207_310 Hb_002367_130 Hb_002367_130 Hb_000640_230--Hb_002367_130 Hb_010222_030--Hb_024714_020 Hb_001863_110 Hb_001863_110 Hb_010222_030--Hb_001863_110 Hb_000034_050 Hb_000034_050 Hb_010222_030--Hb_000034_050 Hb_000230_330 Hb_000230_330 Hb_010222_030--Hb_000230_330 Hb_010222_080 Hb_010222_080 Hb_010222_030--Hb_010222_080 Hb_001584_290 Hb_001584_290 Hb_010222_030--Hb_001584_290 Hb_009411_020 Hb_009411_020 Hb_024714_020--Hb_009411_020 Hb_000462_150 Hb_000462_150 Hb_024714_020--Hb_000462_150 Hb_003006_060 Hb_003006_060 Hb_024714_020--Hb_003006_060 Hb_185467_010 Hb_185467_010 Hb_024714_020--Hb_185467_010 Hb_024714_020--Hb_000230_330 Hb_001828_160 Hb_001828_160 Hb_000207_310--Hb_001828_160 Hb_000116_180 Hb_000116_180 Hb_000207_310--Hb_000116_180 Hb_002890_020 Hb_002890_020 Hb_000207_310--Hb_002890_020 Hb_000913_050 Hb_000913_050 Hb_000207_310--Hb_000913_050 Hb_000029_130 Hb_000029_130 Hb_000207_310--Hb_000029_130 Hb_108216_040 Hb_108216_040 Hb_000207_310--Hb_108216_040 Hb_004450_060 Hb_004450_060 Hb_178968_100--Hb_004450_060 Hb_007026_030 Hb_007026_030 Hb_178968_100--Hb_007026_030 Hb_000088_200 Hb_000088_200 Hb_178968_100--Hb_000088_200 Hb_000808_250 Hb_000808_250 Hb_178968_100--Hb_000808_250 Hb_003467_010 Hb_003467_010 Hb_178968_100--Hb_003467_010 Hb_006623_020 Hb_006623_020 Hb_178968_100--Hb_006623_020 Hb_005662_030 Hb_005662_030 Hb_000028_610--Hb_005662_030 Hb_003641_050 Hb_003641_050 Hb_000028_610--Hb_003641_050 Hb_000367_010 Hb_000367_010 Hb_000028_610--Hb_000367_010 Hb_000028_610--Hb_007026_030 Hb_002893_150 Hb_002893_150 Hb_000028_610--Hb_002893_150 Hb_000028_610--Hb_000207_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.82439 0.829346 0.579916 1.0352 2.59748 2.15231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.85266 1.62796 0.821096 1.04686 0.634062

CAGE analysis