Hb_002893_030

Information

Type -
Description -
Location Contig2893: 31586-33121
Sequence    

Annotation

kegg
ID pop:POPTR_0018s01300g
description POPTRDRAFT_737124; hypothetical protein
nr
ID XP_011026502.1
description PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
swissprot
ID O48780
description 3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=2 SV=1
trembl
ID B9IKT4
description 3-ketoacyl-CoA synthase OS=Populus trichocarpa GN=POPTR_0018s01300g PE=3 SV=1
Gene Ontology
ID GO:0016020
description 3-ketoacyl- synthase 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30257: 31399-33280
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002893_030 0.0 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
2 Hb_004007_070 0.1056536814 - - adenylsulfate kinase, putative [Ricinus communis]
3 Hb_000365_280 0.1160731132 - - calcium binding protein/cast, putative [Ricinus communis]
4 Hb_188281_010 0.1218920007 - - carboxylic ester hydrolase, putative [Ricinus communis]
5 Hb_103942_030 0.1250955578 - - protein with unknown function [Ricinus communis]
6 Hb_012395_110 0.1301299257 - - PREDICTED: peroxygenase [Jatropha curcas]
7 Hb_002026_050 0.1375798101 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
8 Hb_000086_090 0.1418208069 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
9 Hb_004109_210 0.1425064567 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
10 Hb_000098_170 0.1530917794 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
11 Hb_000260_110 0.1542245851 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
12 Hb_000049_270 0.1574109918 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
13 Hb_000479_060 0.1580772607 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
14 Hb_003159_150 0.164118415 - - PREDICTED: glucan endo-1,3-beta-glucosidase 8 [Jatropha curcas]
15 Hb_000742_290 0.1680709924 - - Reticuline oxidase precursor, putative [Ricinus communis]
16 Hb_034507_090 0.1707036287 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
17 Hb_010883_180 0.1754346546 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
18 Hb_001102_160 0.1765985483 - - PREDICTED: galacturonokinase [Jatropha curcas]
19 Hb_000025_160 0.1767694307 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
20 Hb_004410_110 0.1775228551 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_002893_030 Hb_002893_030 Hb_004007_070 Hb_004007_070 Hb_002893_030--Hb_004007_070 Hb_000365_280 Hb_000365_280 Hb_002893_030--Hb_000365_280 Hb_188281_010 Hb_188281_010 Hb_002893_030--Hb_188281_010 Hb_103942_030 Hb_103942_030 Hb_002893_030--Hb_103942_030 Hb_012395_110 Hb_012395_110 Hb_002893_030--Hb_012395_110 Hb_002026_050 Hb_002026_050 Hb_002893_030--Hb_002026_050 Hb_004007_070--Hb_012395_110 Hb_000098_170 Hb_000098_170 Hb_004007_070--Hb_000098_170 Hb_000086_090 Hb_000086_090 Hb_004007_070--Hb_000086_090 Hb_000049_270 Hb_000049_270 Hb_004007_070--Hb_000049_270 Hb_004007_070--Hb_000365_280 Hb_000479_060 Hb_000479_060 Hb_000365_280--Hb_000479_060 Hb_005054_020 Hb_005054_020 Hb_000365_280--Hb_005054_020 Hb_000109_190 Hb_000109_190 Hb_000365_280--Hb_000109_190 Hb_000365_280--Hb_002026_050 Hb_000260_110 Hb_000260_110 Hb_188281_010--Hb_000260_110 Hb_007163_050 Hb_007163_050 Hb_188281_010--Hb_007163_050 Hb_188281_010--Hb_000365_280 Hb_000742_290 Hb_000742_290 Hb_188281_010--Hb_000742_290 Hb_001675_290 Hb_001675_290 Hb_188281_010--Hb_001675_290 Hb_010883_180 Hb_010883_180 Hb_103942_030--Hb_010883_180 Hb_103942_030--Hb_000260_110 Hb_000389_040 Hb_000389_040 Hb_103942_030--Hb_000389_040 Hb_103942_030--Hb_004007_070 Hb_103942_030--Hb_000086_090 Hb_012395_110--Hb_000086_090 Hb_004241_110 Hb_004241_110 Hb_012395_110--Hb_004241_110 Hb_001102_160 Hb_001102_160 Hb_012395_110--Hb_001102_160 Hb_084147_010 Hb_084147_010 Hb_012395_110--Hb_084147_010 Hb_019516_060 Hb_019516_060 Hb_012395_110--Hb_019516_060 Hb_004109_210 Hb_004109_210 Hb_002026_050--Hb_004109_210 Hb_001059_110 Hb_001059_110 Hb_002026_050--Hb_001059_110 Hb_005408_080 Hb_005408_080 Hb_002026_050--Hb_005408_080 Hb_002026_050--Hb_007163_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.322718 9.54931 12.5393 32.4601 0.284498 0.388513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.94207 0.788978 3.95643 1.84126 7.25966

CAGE analysis