Hb_002893_040

Information

Type -
Description -
Location Contig2893: 37240-45560
Sequence    

Annotation

kegg
ID rcu:RCOM_1053860
description hypothetical protein
nr
ID XP_012076632.1
description PREDICTED: carbon catabolite repressor protein 4 homolog 6 isoform X1 [Jatropha curcas]
swissprot
ID Q8VYU4
description Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana GN=CCR4-6 PE=2 SV=2
trembl
ID A0A067KPB7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07205 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30259: 37546-39781 , PASA_asmbl_30260: 37546-40000 , PASA_asmbl_30263: 43365-43775 , PASA_asmbl_30264: 40732-44941 , PASA_asmbl_30265: 45970-46145 , PASA_asmbl_30266: 46244-46667
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002893_040 0.0 - - PREDICTED: carbon catabolite repressor protein 4 homolog 6 isoform X1 [Jatropha curcas]
2 Hb_001258_100 0.0719327108 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
3 Hb_002413_010 0.0789499233 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_001951_200 0.0874883726 - - PREDICTED: cold-regulated 413 inner membrane protein 1, chloroplastic-like [Jatropha curcas]
5 Hb_001776_210 0.0913073041 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
6 Hb_002092_120 0.0969100309 - - PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Jatropha curcas]
7 Hb_002572_020 0.0970271405 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
8 Hb_000173_310 0.0975690667 - - PREDICTED: uncharacterized protein LOC105631893 isoform X1 [Jatropha curcas]
9 Hb_000445_470 0.1004903847 - - PREDICTED: RING finger and transmembrane domain-containing protein 1-like [Jatropha curcas]
10 Hb_001623_270 0.1005613362 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
11 Hb_183433_010 0.1016591768 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
12 Hb_006570_150 0.1023318767 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]
13 Hb_027905_020 0.1036981881 - - PREDICTED: uncharacterized protein LOC105642268 [Jatropha curcas]
14 Hb_001241_010 0.1038849263 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_007254_020 0.1057921152 - - PREDICTED: uncharacterized protein LOC105629137 [Jatropha curcas]
16 Hb_008225_090 0.106940793 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
17 Hb_000238_040 0.1070421722 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
18 Hb_000424_060 0.1071340234 - - PREDICTED: myosin-15 [Jatropha curcas]
19 Hb_002820_030 0.1076310544 - - PREDICTED: uncharacterized protein LOC105638922 [Jatropha curcas]
20 Hb_003913_020 0.1078966034 - - PREDICTED: C2 and GRAM domain-containing protein At5g50170 [Jatropha curcas]

Gene co-expression network

sample Hb_002893_040 Hb_002893_040 Hb_001258_100 Hb_001258_100 Hb_002893_040--Hb_001258_100 Hb_002413_010 Hb_002413_010 Hb_002893_040--Hb_002413_010 Hb_001951_200 Hb_001951_200 Hb_002893_040--Hb_001951_200 Hb_001776_210 Hb_001776_210 Hb_002893_040--Hb_001776_210 Hb_002092_120 Hb_002092_120 Hb_002893_040--Hb_002092_120 Hb_002572_020 Hb_002572_020 Hb_002893_040--Hb_002572_020 Hb_003912_040 Hb_003912_040 Hb_001258_100--Hb_003912_040 Hb_001225_030 Hb_001225_030 Hb_001258_100--Hb_001225_030 Hb_001258_100--Hb_002413_010 Hb_003096_060 Hb_003096_060 Hb_001258_100--Hb_003096_060 Hb_007062_040 Hb_007062_040 Hb_001258_100--Hb_007062_040 Hb_183433_010 Hb_183433_010 Hb_002413_010--Hb_183433_010 Hb_027905_020 Hb_027905_020 Hb_002413_010--Hb_027905_020 Hb_002413_010--Hb_002572_020 Hb_007248_030 Hb_007248_030 Hb_002413_010--Hb_007248_030 Hb_000282_090 Hb_000282_090 Hb_002413_010--Hb_000282_090 Hb_002413_010--Hb_003912_040 Hb_001951_200--Hb_027905_020 Hb_000227_270 Hb_000227_270 Hb_001951_200--Hb_000227_270 Hb_001951_200--Hb_002413_010 Hb_000173_310 Hb_000173_310 Hb_001951_200--Hb_000173_310 Hb_000424_060 Hb_000424_060 Hb_001951_200--Hb_000424_060 Hb_000003_680 Hb_000003_680 Hb_001776_210--Hb_000003_680 Hb_087313_010 Hb_087313_010 Hb_001776_210--Hb_087313_010 Hb_000352_350 Hb_000352_350 Hb_001776_210--Hb_000352_350 Hb_001500_120 Hb_001500_120 Hb_001776_210--Hb_001500_120 Hb_003506_030 Hb_003506_030 Hb_001776_210--Hb_003506_030 Hb_008225_090 Hb_008225_090 Hb_002092_120--Hb_008225_090 Hb_000300_260 Hb_000300_260 Hb_002092_120--Hb_000300_260 Hb_000176_020 Hb_000176_020 Hb_002092_120--Hb_000176_020 Hb_002092_120--Hb_002572_020 Hb_000270_470 Hb_000270_470 Hb_002092_120--Hb_000270_470 Hb_000603_160 Hb_000603_160 Hb_002572_020--Hb_000603_160 Hb_002316_140 Hb_002316_140 Hb_002572_020--Hb_002316_140 Hb_000365_230 Hb_000365_230 Hb_002572_020--Hb_000365_230 Hb_002572_020--Hb_000173_310 Hb_002572_020--Hb_183433_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.99797 10.5579 11.4156 9.40551 5.79128 4.94813
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.46905 7.26156 2.43122 4.45029 7.74161

CAGE analysis