Hb_002893_050

Information

Type -
Description -
Location Contig2893: 45768-48030
Sequence    

Annotation

kegg
ID pop:POPTR_0006s26510g
description POPTRDRAFT_819577; hypothetical protein
nr
ID XP_002309599.1
description hypothetical protein POPTR_0006s26510g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H9R6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s26510g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30268: 47106-47352
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002893_050 0.0 - - hypothetical protein POPTR_0006s26510g [Populus trichocarpa]
2 Hb_000610_050 0.0723831369 - - skp1, putative [Ricinus communis]
3 Hb_024071_020 0.0727757855 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
4 Hb_007875_030 0.0736512119 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
5 Hb_001140_370 0.074316377 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
6 Hb_000342_100 0.0764640602 - - PREDICTED: PITH domain-containing protein 1 [Jatropha curcas]
7 Hb_000217_030 0.0789245255 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
8 Hb_000465_390 0.0842714294 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
9 Hb_002890_140 0.0854692679 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
10 Hb_000982_090 0.0872971625 - - PREDICTED: zinc finger HIT domain-containing protein 3 [Jatropha curcas]
11 Hb_001842_100 0.0889369335 rubber biosynthesis Gene Name: Dimethyallyltransferase hypothetical protein JCGZ_10905 [Jatropha curcas]
12 Hb_000152_500 0.0898770106 - - PREDICTED: probable mitochondrial intermediate peptidase, mitochondrial [Jatropha curcas]
13 Hb_002043_130 0.0905479347 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
14 Hb_020581_010 0.0914734088 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_007423_040 0.0915251723 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
16 Hb_027472_040 0.0934637479 - - SKP1 [Hevea brasiliensis]
17 Hb_001221_100 0.0938027369 - - PREDICTED: elongation factor 1-delta 1-like [Citrus sinensis]
18 Hb_000116_440 0.0939148642 - - PREDICTED: eukaryotic translation initiation factor 6-2 [Jatropha curcas]
19 Hb_000059_330 0.096897733 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
20 Hb_003918_010 0.0969947305 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002893_050 Hb_002893_050 Hb_000610_050 Hb_000610_050 Hb_002893_050--Hb_000610_050 Hb_024071_020 Hb_024071_020 Hb_002893_050--Hb_024071_020 Hb_007875_030 Hb_007875_030 Hb_002893_050--Hb_007875_030 Hb_001140_370 Hb_001140_370 Hb_002893_050--Hb_001140_370 Hb_000342_100 Hb_000342_100 Hb_002893_050--Hb_000342_100 Hb_000217_030 Hb_000217_030 Hb_002893_050--Hb_000217_030 Hb_000610_050--Hb_024071_020 Hb_027472_040 Hb_027472_040 Hb_000610_050--Hb_027472_040 Hb_000610_050--Hb_007875_030 Hb_000796_210 Hb_000796_210 Hb_000610_050--Hb_000796_210 Hb_000610_050--Hb_000342_100 Hb_024071_020--Hb_001140_370 Hb_003126_050 Hb_003126_050 Hb_024071_020--Hb_003126_050 Hb_000020_060 Hb_000020_060 Hb_024071_020--Hb_000020_060 Hb_000059_330 Hb_000059_330 Hb_024071_020--Hb_000059_330 Hb_003428_030 Hb_003428_030 Hb_024071_020--Hb_003428_030 Hb_003878_010 Hb_003878_010 Hb_007875_030--Hb_003878_010 Hb_007875_030--Hb_024071_020 Hb_001047_240 Hb_001047_240 Hb_007875_030--Hb_001047_240 Hb_007875_030--Hb_001140_370 Hb_001016_030 Hb_001016_030 Hb_001140_370--Hb_001016_030 Hb_001157_020 Hb_001157_020 Hb_001140_370--Hb_001157_020 Hb_003918_010 Hb_003918_010 Hb_001140_370--Hb_003918_010 Hb_006059_050 Hb_006059_050 Hb_001140_370--Hb_006059_050 Hb_172426_040 Hb_172426_040 Hb_001140_370--Hb_172426_040 Hb_000342_100--Hb_001140_370 Hb_062226_140 Hb_062226_140 Hb_000342_100--Hb_062226_140 Hb_000003_080 Hb_000003_080 Hb_000342_100--Hb_000003_080 Hb_000342_100--Hb_024071_020 Hb_003787_010 Hb_003787_010 Hb_000217_030--Hb_003787_010 Hb_004116_190 Hb_004116_190 Hb_000217_030--Hb_004116_190 Hb_002995_020 Hb_002995_020 Hb_000217_030--Hb_002995_020 Hb_001691_140 Hb_001691_140 Hb_000217_030--Hb_001691_140 Hb_002518_080 Hb_002518_080 Hb_000217_030--Hb_002518_080 Hb_022425_040 Hb_022425_040 Hb_000217_030--Hb_022425_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.48109 1.57752 1.71565 2.69231 2.21114 2.60353
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.18562 5.25743 1.66996 2.71034 1.39108

CAGE analysis