Hb_002893_070

Information

Type -
Description -
Location Contig2893: 51614-53974
Sequence    

Annotation

kegg
ID rcu:RCOM_1053800
description monoxygenase, putative
nr
ID XP_012076640.1
description PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
swissprot
ID P86491
description 6-hydroxynicotinate 3-monooxygenase OS=Pseudomonas fluorescens PE=1 SV=1
trembl
ID A0A067KBV6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07208 PE=4 SV=1
Gene Ontology
ID GO:0004497
description zeaxanthin chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30271: 51732-52454 , PASA_asmbl_30273: 52495-53493
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002893_070 0.0 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
2 Hb_003440_060 0.0512504548 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
3 Hb_000080_120 0.0751108155 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
4 Hb_022693_140 0.0804797702 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
5 Hb_000224_160 0.0806578892 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
6 Hb_000723_100 0.0827801666 - - phosphoglycerate kinase, putative [Ricinus communis]
7 Hb_003939_050 0.0845836986 - - protein with unknown function [Ricinus communis]
8 Hb_000665_160 0.0848323344 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Jatropha curcas]
9 Hb_000342_130 0.0858921901 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
10 Hb_004837_030 0.0867225002 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
11 Hb_007632_030 0.0877458857 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
12 Hb_000076_130 0.0891705577 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
13 Hb_012395_230 0.0895263611 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
14 Hb_002592_060 0.0898571075 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007163_070 0.0899020828 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
16 Hb_008642_040 0.0905604566 - - PREDICTED: nucleolar GTP-binding protein 1 isoform X2 [Jatropha curcas]
17 Hb_001135_220 0.0910249233 - - FGFR1 oncogene partner, putative [Ricinus communis]
18 Hb_004032_410 0.0911549928 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
19 Hb_065500_060 0.0919505403 - - PREDICTED: uncharacterized protein LOC105633723 [Jatropha curcas]
20 Hb_001489_050 0.0919864618 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002893_070 Hb_002893_070 Hb_003440_060 Hb_003440_060 Hb_002893_070--Hb_003440_060 Hb_000080_120 Hb_000080_120 Hb_002893_070--Hb_000080_120 Hb_022693_140 Hb_022693_140 Hb_002893_070--Hb_022693_140 Hb_000224_160 Hb_000224_160 Hb_002893_070--Hb_000224_160 Hb_000723_100 Hb_000723_100 Hb_002893_070--Hb_000723_100 Hb_003939_050 Hb_003939_050 Hb_002893_070--Hb_003939_050 Hb_008642_040 Hb_008642_040 Hb_003440_060--Hb_008642_040 Hb_003440_060--Hb_000723_100 Hb_004032_410 Hb_004032_410 Hb_003440_060--Hb_004032_410 Hb_004310_140 Hb_004310_140 Hb_003440_060--Hb_004310_140 Hb_001489_050 Hb_001489_050 Hb_003440_060--Hb_001489_050 Hb_002163_040 Hb_002163_040 Hb_000080_120--Hb_002163_040 Hb_000804_040 Hb_000804_040 Hb_000080_120--Hb_000804_040 Hb_000080_120--Hb_000224_160 Hb_000076_130 Hb_000076_130 Hb_000080_120--Hb_000076_130 Hb_012022_150 Hb_012022_150 Hb_000080_120--Hb_012022_150 Hb_022693_140--Hb_012022_150 Hb_022693_140--Hb_000804_040 Hb_022693_140--Hb_000224_160 Hb_029879_010 Hb_029879_010 Hb_022693_140--Hb_029879_010 Hb_000184_170 Hb_000184_170 Hb_022693_140--Hb_000184_170 Hb_000137_040 Hb_000137_040 Hb_022693_140--Hb_000137_040 Hb_001584_200 Hb_001584_200 Hb_000224_160--Hb_001584_200 Hb_000224_160--Hb_012022_150 Hb_011716_130 Hb_011716_130 Hb_000224_160--Hb_011716_130 Hb_000224_160--Hb_002163_040 Hb_000224_160--Hb_000184_170 Hb_000723_100--Hb_004310_140 Hb_000665_160 Hb_000665_160 Hb_000723_100--Hb_000665_160 Hb_000740_050 Hb_000740_050 Hb_000723_100--Hb_000740_050 Hb_000061_020 Hb_000061_020 Hb_000723_100--Hb_000061_020 Hb_030736_100 Hb_030736_100 Hb_003939_050--Hb_030736_100 Hb_003939_050--Hb_029879_010 Hb_000883_020 Hb_000883_020 Hb_003939_050--Hb_000883_020 Hb_000819_080 Hb_000819_080 Hb_003939_050--Hb_000819_080 Hb_001141_020 Hb_001141_020 Hb_003939_050--Hb_001141_020 Hb_007632_030 Hb_007632_030 Hb_003939_050--Hb_007632_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.35842 3.62482 7.02898 4.38878 10.0219 8.7445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.09518 7.91855 4.96149 4.55189 9.98536

CAGE analysis