Hb_002893_150

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig2893: 105361-110045
Sequence    

Annotation

kegg
ID pop:POPTR_0018s06120g
description POPTRDRAFT_835874; hypothetical protein
nr
ID XP_012076661.1
description PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
swissprot
ID Q9SYG2
description Trihelix transcription factor ASIL1 OS=Arabidopsis thaliana GN=ASIL1 PE=1 SV=1
trembl
ID A0A067KF82
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07219 PE=4 SV=1
Gene Ontology
ID GO:0003700
description alcohol dehydrogenase transcription factor myb sant-like family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30280: 105346-110068 , PASA_asmbl_30281: 107135-107253
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002893_150 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
2 Hb_000531_090 0.04643538 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
3 Hb_000789_080 0.0562823788 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
4 Hb_001235_200 0.0694268393 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000510_200 0.0699388889 - - nucleotide binding protein, putative [Ricinus communis]
6 Hb_125092_020 0.0703351175 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
7 Hb_000436_040 0.0764437769 - - PREDICTED: transportin-1 [Jatropha curcas]
8 Hb_002235_160 0.0792043506 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
9 Hb_152079_010 0.079220409 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
10 Hb_000035_040 0.0795063204 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
11 Hb_004570_020 0.079931394 - - PREDICTED: protein TIC 100 [Jatropha curcas]
12 Hb_021409_170 0.0811415926 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
13 Hb_000335_010 0.0814533819 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_046615_020 0.0856887444 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
15 Hb_000915_050 0.0863657653 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001221_040 0.0864294304 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
17 Hb_000072_150 0.0866276778 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
18 Hb_004370_030 0.0874053746 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
19 Hb_010423_020 0.0887524388 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
20 Hb_011030_010 0.0887861487 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_002893_150 Hb_002893_150 Hb_000531_090 Hb_000531_090 Hb_002893_150--Hb_000531_090 Hb_000789_080 Hb_000789_080 Hb_002893_150--Hb_000789_080 Hb_001235_200 Hb_001235_200 Hb_002893_150--Hb_001235_200 Hb_000510_200 Hb_000510_200 Hb_002893_150--Hb_000510_200 Hb_125092_020 Hb_125092_020 Hb_002893_150--Hb_125092_020 Hb_000436_040 Hb_000436_040 Hb_002893_150--Hb_000436_040 Hb_000531_090--Hb_125092_020 Hb_000531_090--Hb_000789_080 Hb_000035_040 Hb_000035_040 Hb_000531_090--Hb_000035_040 Hb_000343_210 Hb_000343_210 Hb_000531_090--Hb_000343_210 Hb_147737_010 Hb_147737_010 Hb_000531_090--Hb_147737_010 Hb_000335_010 Hb_000335_010 Hb_000789_080--Hb_000335_010 Hb_026099_010 Hb_026099_010 Hb_000789_080--Hb_026099_010 Hb_002400_180 Hb_002400_180 Hb_000789_080--Hb_002400_180 Hb_002044_060 Hb_002044_060 Hb_000789_080--Hb_002044_060 Hb_001599_030 Hb_001599_030 Hb_001235_200--Hb_001599_030 Hb_000714_050 Hb_000714_050 Hb_001235_200--Hb_000714_050 Hb_001235_200--Hb_000035_040 Hb_010381_060 Hb_010381_060 Hb_001235_200--Hb_010381_060 Hb_000320_200 Hb_000320_200 Hb_001235_200--Hb_000320_200 Hb_007558_120 Hb_007558_120 Hb_001235_200--Hb_007558_120 Hb_000072_150 Hb_000072_150 Hb_000510_200--Hb_000072_150 Hb_002798_040 Hb_002798_040 Hb_000510_200--Hb_002798_040 Hb_000429_120 Hb_000429_120 Hb_000510_200--Hb_000429_120 Hb_000100_070 Hb_000100_070 Hb_000510_200--Hb_000100_070 Hb_000046_440 Hb_000046_440 Hb_000510_200--Hb_000046_440 Hb_000331_190 Hb_000331_190 Hb_125092_020--Hb_000331_190 Hb_002652_040 Hb_002652_040 Hb_125092_020--Hb_002652_040 Hb_125092_020--Hb_000035_040 Hb_024990_010 Hb_024990_010 Hb_125092_020--Hb_024990_010 Hb_000567_010 Hb_000567_010 Hb_125092_020--Hb_000567_010 Hb_021409_170 Hb_021409_170 Hb_000436_040--Hb_021409_170 Hb_000023_190 Hb_000023_190 Hb_000436_040--Hb_000023_190 Hb_000347_130 Hb_000347_130 Hb_000436_040--Hb_000347_130 Hb_003464_020 Hb_003464_020 Hb_000436_040--Hb_003464_020 Hb_004218_240 Hb_004218_240 Hb_000436_040--Hb_004218_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.6114 27.8122 19.4374 19.3914 51.5747 76.5633
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.0709 18.1712 29.0642 36.8875 25.7204

CAGE analysis