Hb_002893_190

Information

Type -
Description -
Location Contig2893: 127634-135229
Sequence    

Annotation

kegg
ID rcu:RCOM_1053330
description aldehyde dehydrogenase, putative (EC:1.2.1.36)
nr
ID CDP03347.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q56YU0
description Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana GN=ALDH2C4 PE=1 SV=2
trembl
ID A0A068U4W3
description Coffea canephora DH200=94 genomic scaffold, scaffold_9 OS=Coffea canephora GN=GSCOC_T00041898001 PE=3 SV=1
Gene Ontology
ID GO:0001758
description aldehyde dehydrogenase family 2 member c4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30282: 127534-127725 , PASA_asmbl_30283: 127825-129594 , PASA_asmbl_30284: 132002-135142
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002893_190 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_003106_110 0.1380652579 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
3 Hb_015306_010 0.1386549004 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
4 Hb_001689_070 0.1400112703 - - cytochrome P450, putative [Ricinus communis]
5 Hb_006469_090 0.1438508046 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
6 Hb_012033_010 0.1456087723 - - PREDICTED: histone H1.2-like [Jatropha curcas]
7 Hb_002811_020 0.1493244191 - - Cysteine synthase [Morus notabilis]
8 Hb_000866_190 0.1505826254 - - transcription factor, putative [Ricinus communis]
9 Hb_007850_110 0.1535991473 - - MADS-box transcription factor 3 [Hevea brasiliensis]
10 Hb_046998_010 0.1566502687 desease resistance Gene Name: LRR_4 Disease resistance protein RPM1, putative [Ricinus communis]
11 Hb_003092_050 0.1573374853 - - PREDICTED: putative chloride channel-like protein CLC-g [Jatropha curcas]
12 Hb_003607_140 0.1611918009 - - 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
13 Hb_002601_140 0.1618725205 - - signal transducer, putative [Ricinus communis]
14 Hb_000594_130 0.163946782 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_005485_070 0.1662727645 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
16 Hb_005568_050 0.1663027839 - - ascorbate peroxidase [Hevea brasiliensis]
17 Hb_005523_050 0.1687173475 - - hypothetical protein JCGZ_09175 [Jatropha curcas]
18 Hb_001109_130 0.1687764498 - - PREDICTED: coiled-coil domain-containing protein 136 isoform X1 [Jatropha curcas]
19 Hb_017098_050 0.1688729754 - - hypothetical protein POPTR_0001s03540g [Populus trichocarpa]
20 Hb_009193_060 0.1690009355 - - PREDICTED: ureide permease 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002893_190 Hb_002893_190 Hb_003106_110 Hb_003106_110 Hb_002893_190--Hb_003106_110 Hb_015306_010 Hb_015306_010 Hb_002893_190--Hb_015306_010 Hb_001689_070 Hb_001689_070 Hb_002893_190--Hb_001689_070 Hb_006469_090 Hb_006469_090 Hb_002893_190--Hb_006469_090 Hb_012033_010 Hb_012033_010 Hb_002893_190--Hb_012033_010 Hb_002811_020 Hb_002811_020 Hb_002893_190--Hb_002811_020 Hb_000739_160 Hb_000739_160 Hb_003106_110--Hb_000739_160 Hb_003106_110--Hb_015306_010 Hb_002301_370 Hb_002301_370 Hb_003106_110--Hb_002301_370 Hb_005485_070 Hb_005485_070 Hb_003106_110--Hb_005485_070 Hb_000085_380 Hb_000085_380 Hb_003106_110--Hb_000085_380 Hb_000760_080 Hb_000760_080 Hb_003106_110--Hb_000760_080 Hb_000866_190 Hb_000866_190 Hb_015306_010--Hb_000866_190 Hb_009554_030 Hb_009554_030 Hb_015306_010--Hb_009554_030 Hb_000398_140 Hb_000398_140 Hb_015306_010--Hb_000398_140 Hb_004122_060 Hb_004122_060 Hb_015306_010--Hb_004122_060 Hb_000258_210 Hb_000258_210 Hb_015306_010--Hb_000258_210 Hb_002675_230 Hb_002675_230 Hb_001689_070--Hb_002675_230 Hb_005568_050 Hb_005568_050 Hb_001689_070--Hb_005568_050 Hb_000215_130 Hb_000215_130 Hb_001689_070--Hb_000215_130 Hb_001689_070--Hb_006469_090 Hb_000866_040 Hb_000866_040 Hb_001689_070--Hb_000866_040 Hb_001439_010 Hb_001439_010 Hb_006469_090--Hb_001439_010 Hb_007850_110 Hb_007850_110 Hb_006469_090--Hb_007850_110 Hb_006469_090--Hb_000866_190 Hb_003607_140 Hb_003607_140 Hb_006469_090--Hb_003607_140 Hb_005663_090 Hb_005663_090 Hb_006469_090--Hb_005663_090 Hb_000680_070 Hb_000680_070 Hb_006469_090--Hb_000680_070 Hb_001821_060 Hb_001821_060 Hb_012033_010--Hb_001821_060 Hb_004096_220 Hb_004096_220 Hb_012033_010--Hb_004096_220 Hb_000256_160 Hb_000256_160 Hb_012033_010--Hb_000256_160 Hb_009193_010 Hb_009193_010 Hb_012033_010--Hb_009193_010 Hb_013968_010 Hb_013968_010 Hb_012033_010--Hb_013968_010 Hb_002888_040 Hb_002888_040 Hb_012033_010--Hb_002888_040 Hb_003842_010 Hb_003842_010 Hb_002811_020--Hb_003842_010 Hb_005523_050 Hb_005523_050 Hb_002811_020--Hb_005523_050 Hb_011537_020 Hb_011537_020 Hb_002811_020--Hb_011537_020 Hb_000215_250 Hb_000215_250 Hb_002811_020--Hb_000215_250 Hb_001018_080 Hb_001018_080 Hb_002811_020--Hb_001018_080 Hb_003085_080 Hb_003085_080 Hb_002811_020--Hb_003085_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.24313 6.13841 11.2588 10.0105 2.1881 0.445249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0269738 0.03184 0.1626 14.3448 14.9409

CAGE analysis