Hb_002894_020

Information

Type -
Description -
Location Contig2894: 24397-24831
Sequence    

Annotation

kegg
ID rcu:RCOM_1438770
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012088677.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
swissprot
ID Q0WQW5
description Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2
trembl
ID A0A067JUQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23067 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002894_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
2 Hb_000445_480 0.0597349099 - - cytochrome P450, putative [Ricinus communis]
3 Hb_000224_020 0.076006141 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
4 Hb_033153_030 0.0872212866 - - PREDICTED: uncharacterized protein LOC105650145 [Jatropha curcas]
5 Hb_007426_100 0.0900381847 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002874_100 0.0975948882 - - cytochrome P450, putative [Ricinus communis]
7 Hb_000363_100 0.100780924 - - -
8 Hb_000224_050 0.1013361117 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001529_010 0.1017794281 - - -
10 Hb_001104_290 0.1061073635 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Theobroma cacao]
11 Hb_010926_020 0.1076994605 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Camelina sativa]
12 Hb_000027_010 0.1141465509 - - -
13 Hb_000186_090 0.119603436 - - ACC oxidase 1 [Hevea brasiliensis]
14 Hb_008727_090 0.1197033174 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
15 Hb_000203_120 0.1205853115 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000917_220 0.1218050276 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
17 Hb_002277_020 0.1230435929 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
18 Hb_007292_020 0.1246041784 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
19 Hb_029508_040 0.1246592124 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
20 Hb_103931_010 0.1267853367 - - -

Gene co-expression network

sample Hb_002894_020 Hb_002894_020 Hb_000445_480 Hb_000445_480 Hb_002894_020--Hb_000445_480 Hb_000224_020 Hb_000224_020 Hb_002894_020--Hb_000224_020 Hb_033153_030 Hb_033153_030 Hb_002894_020--Hb_033153_030 Hb_007426_100 Hb_007426_100 Hb_002894_020--Hb_007426_100 Hb_002874_100 Hb_002874_100 Hb_002894_020--Hb_002874_100 Hb_000363_100 Hb_000363_100 Hb_002894_020--Hb_000363_100 Hb_000445_480--Hb_033153_030 Hb_001529_010 Hb_001529_010 Hb_000445_480--Hb_001529_010 Hb_000445_480--Hb_002874_100 Hb_000445_480--Hb_007426_100 Hb_000445_480--Hb_000363_100 Hb_004474_020 Hb_004474_020 Hb_000224_020--Hb_004474_020 Hb_004899_380 Hb_004899_380 Hb_000224_020--Hb_004899_380 Hb_000224_050 Hb_000224_050 Hb_000224_020--Hb_000224_050 Hb_000917_220 Hb_000917_220 Hb_000224_020--Hb_000917_220 Hb_174829_030 Hb_174829_030 Hb_000224_020--Hb_174829_030 Hb_033153_030--Hb_001529_010 Hb_033153_030--Hb_002874_100 Hb_033153_030--Hb_007426_100 Hb_005373_030 Hb_005373_030 Hb_033153_030--Hb_005373_030 Hb_007426_100--Hb_002874_100 Hb_000194_030 Hb_000194_030 Hb_007426_100--Hb_000194_030 Hb_007426_100--Hb_001529_010 Hb_002874_100--Hb_000363_100 Hb_001104_290 Hb_001104_290 Hb_002874_100--Hb_001104_290 Hb_003252_030 Hb_003252_030 Hb_002874_100--Hb_003252_030 Hb_000363_100--Hb_001104_290 Hb_000363_100--Hb_003252_030 Hb_011689_090 Hb_011689_090 Hb_000363_100--Hb_011689_090 Hb_116679_010 Hb_116679_010 Hb_000363_100--Hb_116679_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.07061 0.812393 9.67208 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.282905 0

CAGE analysis