Hb_002894_070

Information

Type -
Description -
Location Contig2894: 76713-78873
Sequence    

Annotation

kegg
ID cit:102617022
description probable xyloglucan endotransglucosylase/hydrolase protein B-like
nr
ID XP_012088673.1
description PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein B [Jatropha curcas]
swissprot
ID Q8LNZ5
description Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1
trembl
ID A0A067JTD0
description Xyloglucan endotransglucosylase/hydrolase OS=Jatropha curcas GN=JCGZ_23063 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable xyloglucan endotransglucosylase hydrolase protein b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30292: 76586-78873
cDNA
(Sanger)
(ID:Location)		 050_G11.ab1: 78249-78867

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002894_070 0.0 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein B [Jatropha curcas]
2 Hb_000313_280 0.1010257473 - - hypothetical protein PRUPE_ppa014856mg, partial [Prunus persica]
3 Hb_000740_080 0.1326987798 - - -
4 Hb_000616_100 0.1341897767 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
5 Hb_019299_020 0.1516401645 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
6 Hb_000563_140 0.1568614446 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
7 Hb_020831_060 0.1571400615 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
8 Hb_005736_010 0.1585655171 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
9 Hb_000015_140 0.1593159615 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
10 Hb_000373_260 0.1596352983 - - hypothetical protein POPTR_0002s06820g [Populus trichocarpa]
11 Hb_001322_010 0.1602912054 - - PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]
12 Hb_000149_020 0.1607521574 - - Proline-rich receptor-like protein kinase PERK14 [Glycine soja]
13 Hb_002277_020 0.1617137867 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
14 Hb_000000_300 0.1639430566 - - PREDICTED: pathogenesis-related protein 5 [Jatropha curcas]
15 Hb_004970_100 0.1650145972 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
16 Hb_000139_460 0.1683333068 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
17 Hb_033772_040 0.171123207 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002122_060 0.1735830922 - - PREDICTED: putative disease resistance protein RGA4 [Beta vulgaris subsp. vulgaris]
19 Hb_001300_030 0.1736337026 - - hypothetical protein JCGZ_13871 [Jatropha curcas]
20 Hb_000860_030 0.1747651226 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002894_070 Hb_002894_070 Hb_000313_280 Hb_000313_280 Hb_002894_070--Hb_000313_280 Hb_000740_080 Hb_000740_080 Hb_002894_070--Hb_000740_080 Hb_000616_100 Hb_000616_100 Hb_002894_070--Hb_000616_100 Hb_019299_020 Hb_019299_020 Hb_002894_070--Hb_019299_020 Hb_000563_140 Hb_000563_140 Hb_002894_070--Hb_000563_140 Hb_020831_060 Hb_020831_060 Hb_002894_070--Hb_020831_060 Hb_002122_060 Hb_002122_060 Hb_000313_280--Hb_002122_060 Hb_000015_140 Hb_000015_140 Hb_000313_280--Hb_000015_140 Hb_000313_280--Hb_000616_100 Hb_000450_170 Hb_000450_170 Hb_000313_280--Hb_000450_170 Hb_003226_130 Hb_003226_130 Hb_000313_280--Hb_003226_130 Hb_000740_080--Hb_019299_020 Hb_000897_010 Hb_000897_010 Hb_000740_080--Hb_000897_010 Hb_000149_020 Hb_000149_020 Hb_000740_080--Hb_000149_020 Hb_002768_040 Hb_002768_040 Hb_000740_080--Hb_002768_040 Hb_004970_100 Hb_004970_100 Hb_000740_080--Hb_004970_100 Hb_000352_360 Hb_000352_360 Hb_000740_080--Hb_000352_360 Hb_000616_100--Hb_000149_020 Hb_000616_100--Hb_002122_060 Hb_000373_260 Hb_000373_260 Hb_000616_100--Hb_000373_260 Hb_000616_100--Hb_000740_080 Hb_003582_010 Hb_003582_010 Hb_000616_100--Hb_003582_010 Hb_000139_460 Hb_000139_460 Hb_019299_020--Hb_000139_460 Hb_002304_110 Hb_002304_110 Hb_019299_020--Hb_002304_110 Hb_001257_140 Hb_001257_140 Hb_019299_020--Hb_001257_140 Hb_010863_020 Hb_010863_020 Hb_019299_020--Hb_010863_020 Hb_019299_020--Hb_000352_360 Hb_000890_120 Hb_000890_120 Hb_000563_140--Hb_000890_120 Hb_000563_140--Hb_004970_100 Hb_002900_180 Hb_002900_180 Hb_000563_140--Hb_002900_180 Hb_000568_020 Hb_000568_020 Hb_000563_140--Hb_000568_020 Hb_005214_050 Hb_005214_050 Hb_000563_140--Hb_005214_050 Hb_000243_340 Hb_000243_340 Hb_000563_140--Hb_000243_340 Hb_000011_260 Hb_000011_260 Hb_020831_060--Hb_000011_260 Hb_020831_060--Hb_004970_100 Hb_020831_060--Hb_019299_020 Hb_000000_300 Hb_000000_300 Hb_020831_060--Hb_000000_300 Hb_000236_210 Hb_000236_210 Hb_020831_060--Hb_000236_210 Hb_003777_150 Hb_003777_150 Hb_020831_060--Hb_003777_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.20628 128.523 118.627 889.434 1.08115 0.483301
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.74772 24.0144 11.6415 93.7937 19.1735

CAGE analysis