Hb_002894_080

Information

Type -
Description -
Location Contig2894: 93847-95338
Sequence    

Annotation

kegg
ID rcu:RCOM_1438930
description hypothetical protein
nr
ID XP_002512705.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9RG36
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1438930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30294: 93800-94071 , PASA_asmbl_30295: 94258-94413 , PASA_asmbl_30296: 94636-95319
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002894_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000000_050 0.087951078 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001279_400 0.0891583975 - - PREDICTED: uncharacterized protein LOC105633544 [Jatropha curcas]
4 Hb_004917_020 0.106370364 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
5 Hb_000813_070 0.1114271647 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002973_050 0.1141823266 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
7 Hb_001951_080 0.1143575202 - - O-acetyltransferase, putative [Ricinus communis]
8 Hb_003086_030 0.1147313511 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
9 Hb_133974_010 0.1190104262 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
10 Hb_003177_040 0.1198147423 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
11 Hb_001001_070 0.1212804785 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
12 Hb_020375_010 0.1216421129 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
13 Hb_001699_080 0.1225943527 - - unnamed protein product [Coffea canephora]
14 Hb_000358_060 0.1235532552 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
15 Hb_000003_580 0.1251140724 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000251_120 0.1289266214 - - O-acetyltransferase, putative [Ricinus communis]
17 Hb_163950_050 0.1289539627 - - protein binding protein, putative [Ricinus communis]
18 Hb_000620_040 0.1321869999 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
19 Hb_001512_130 0.1340335684 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
20 Hb_000005_010 0.1340645644 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]

Gene co-expression network

sample Hb_002894_080 Hb_002894_080 Hb_000000_050 Hb_000000_050 Hb_002894_080--Hb_000000_050 Hb_001279_400 Hb_001279_400 Hb_002894_080--Hb_001279_400 Hb_004917_020 Hb_004917_020 Hb_002894_080--Hb_004917_020 Hb_000813_070 Hb_000813_070 Hb_002894_080--Hb_000813_070 Hb_002973_050 Hb_002973_050 Hb_002894_080--Hb_002973_050 Hb_001951_080 Hb_001951_080 Hb_002894_080--Hb_001951_080 Hb_020375_010 Hb_020375_010 Hb_000000_050--Hb_020375_010 Hb_000000_050--Hb_001279_400 Hb_000620_040 Hb_000620_040 Hb_000000_050--Hb_000620_040 Hb_015934_090 Hb_015934_090 Hb_000000_050--Hb_015934_090 Hb_003032_030 Hb_003032_030 Hb_000000_050--Hb_003032_030 Hb_001279_400--Hb_004917_020 Hb_001279_400--Hb_002973_050 Hb_001279_400--Hb_000813_070 Hb_002171_050 Hb_002171_050 Hb_001279_400--Hb_002171_050 Hb_004917_020--Hb_002973_050 Hb_133974_010 Hb_133974_010 Hb_004917_020--Hb_133974_010 Hb_004917_020--Hb_002171_050 Hb_000137_050 Hb_000137_050 Hb_004917_020--Hb_000137_050 Hb_002835_070 Hb_002835_070 Hb_004917_020--Hb_002835_070 Hb_005711_030 Hb_005711_030 Hb_000813_070--Hb_005711_030 Hb_002151_070 Hb_002151_070 Hb_000813_070--Hb_002151_070 Hb_001289_070 Hb_001289_070 Hb_000813_070--Hb_001289_070 Hb_000813_070--Hb_020375_010 Hb_001688_050 Hb_001688_050 Hb_000813_070--Hb_001688_050 Hb_002973_050--Hb_133974_010 Hb_002973_050--Hb_002835_070 Hb_002973_050--Hb_005711_030 Hb_002973_050--Hb_000813_070 Hb_012484_050 Hb_012484_050 Hb_001951_080--Hb_012484_050 Hb_005784_010 Hb_005784_010 Hb_001951_080--Hb_005784_010 Hb_000345_550 Hb_000345_550 Hb_001951_080--Hb_000345_550 Hb_001486_280 Hb_001486_280 Hb_001951_080--Hb_001486_280 Hb_003097_160 Hb_003097_160 Hb_001951_080--Hb_003097_160 Hb_003125_210 Hb_003125_210 Hb_001951_080--Hb_003125_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0295043 0.457657 0.620074 2.71689 0.0739167 0.0816813
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0264562 0 0.158549 1.82139

CAGE analysis