Hb_002894_090

Information

Type -
Description -
Location Contig2894: 95830-99923
Sequence    

Annotation

kegg
ID pop:POPTR_0001s12610g
description POPTRDRAFT_179467; hypothetical protein
nr
ID XP_012088670.1
description PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]
swissprot
ID Q68CP4
description Heparan-alpha-glucosaminide N-acetyltransferase OS=Homo sapiens GN=HGSNAT PE=1 SV=2
trembl
ID B9GMX1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s12610g PE=4 SV=2
Gene Ontology
ID GO:0016740
description heparan-alpha-glucosaminide n-acetyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30297: 95824-96620 , PASA_asmbl_30298: 96762-98070
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002894_090 0.0 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]
2 Hb_000122_260 0.1308901012 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 1-like [Jatropha curcas]
3 Hb_000069_370 0.141444631 - - -
4 Hb_001266_160 0.142771868 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
5 Hb_011053_030 0.1438168557 - - -
6 Hb_000359_160 0.1487316349 - - PREDICTED: protein CAJ1 [Jatropha curcas]
7 Hb_000975_050 0.1499594255 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
8 Hb_002010_110 0.1523950706 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
9 Hb_011053_020 0.1537081632 - - lipoic acid synthetase, putative [Ricinus communis]
10 Hb_000317_180 0.155426135 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
11 Hb_000966_040 0.1558367131 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
12 Hb_000108_250 0.1565509286 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X1 [Jatropha curcas]
13 Hb_183963_010 0.1569293044 - - core region of GTP cyclohydrolase I family protein [Populus trichocarpa]
14 Hb_003494_130 0.1580054181 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
15 Hb_004979_050 0.1621625638 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
16 Hb_000012_010 0.162373753 - - hypothetical protein JCGZ_07709 [Jatropha curcas]
17 Hb_004109_130 0.1641444094 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
18 Hb_010098_040 0.1653802096 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
19 Hb_000023_210 0.1670891539 - - PREDICTED: protein TIC 55, chloroplastic [Jatropha curcas]
20 Hb_000032_400 0.1673282764 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]

Gene co-expression network

sample Hb_002894_090 Hb_002894_090 Hb_000122_260 Hb_000122_260 Hb_002894_090--Hb_000122_260 Hb_000069_370 Hb_000069_370 Hb_002894_090--Hb_000069_370 Hb_001266_160 Hb_001266_160 Hb_002894_090--Hb_001266_160 Hb_011053_030 Hb_011053_030 Hb_002894_090--Hb_011053_030 Hb_000359_160 Hb_000359_160 Hb_002894_090--Hb_000359_160 Hb_000975_050 Hb_000975_050 Hb_002894_090--Hb_000975_050 Hb_000108_250 Hb_000108_250 Hb_000122_260--Hb_000108_250 Hb_002010_110 Hb_002010_110 Hb_000122_260--Hb_002010_110 Hb_010098_040 Hb_010098_040 Hb_000122_260--Hb_010098_040 Hb_000122_260--Hb_000975_050 Hb_000966_040 Hb_000966_040 Hb_000122_260--Hb_000966_040 Hb_000038_020 Hb_000038_020 Hb_000069_370--Hb_000038_020 Hb_000029_330 Hb_000029_330 Hb_000069_370--Hb_000029_330 Hb_000667_140 Hb_000667_140 Hb_000069_370--Hb_000667_140 Hb_002835_090 Hb_002835_090 Hb_000069_370--Hb_002835_090 Hb_000069_370--Hb_001266_160 Hb_005332_150 Hb_005332_150 Hb_000069_370--Hb_005332_150 Hb_001266_160--Hb_000029_330 Hb_000359_070 Hb_000359_070 Hb_001266_160--Hb_000359_070 Hb_004979_050 Hb_004979_050 Hb_001266_160--Hb_004979_050 Hb_000317_180 Hb_000317_180 Hb_001266_160--Hb_000317_180 Hb_134949_010 Hb_134949_010 Hb_001266_160--Hb_134949_010 Hb_001266_160--Hb_000359_160 Hb_000834_080 Hb_000834_080 Hb_011053_030--Hb_000834_080 Hb_000175_050 Hb_000175_050 Hb_011053_030--Hb_000175_050 Hb_000032_400 Hb_000032_400 Hb_011053_030--Hb_000032_400 Hb_026314_030 Hb_026314_030 Hb_011053_030--Hb_026314_030 Hb_000866_050 Hb_000866_050 Hb_011053_030--Hb_000866_050 Hb_126917_010 Hb_126917_010 Hb_011053_030--Hb_126917_010 Hb_000359_160--Hb_004979_050 Hb_000679_320 Hb_000679_320 Hb_000359_160--Hb_000679_320 Hb_009393_140 Hb_009393_140 Hb_000359_160--Hb_009393_140 Hb_000723_320 Hb_000723_320 Hb_000359_160--Hb_000723_320 Hb_000359_160--Hb_000359_070 Hb_002814_010 Hb_002814_010 Hb_000359_160--Hb_002814_010 Hb_000975_050--Hb_000966_040 Hb_000975_050--Hb_010098_040 Hb_000975_050--Hb_000834_080 Hb_000441_050 Hb_000441_050 Hb_000975_050--Hb_000441_050 Hb_005181_120 Hb_005181_120 Hb_000975_050--Hb_005181_120 Hb_005977_060 Hb_005977_060 Hb_000975_050--Hb_005977_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.422841 1.4699 2.89458 3.0896 0.117781 0.403589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.84669 0.450649 1.29718 0.273072 11.1083

CAGE analysis