Hb_002896_060

Information

Type -
Description -
Location Contig2896: 65957-78301
Sequence    

Annotation

kegg
ID tcc:TCM_006636
description Calcium-dependent lipid-binding family protein isoform 3
nr
ID XP_012081761.1
description PREDICTED: synaptotagmin-2 [Jatropha curcas]
swissprot
ID Q9SKR2
description Synaptotagmin-1 OS=Arabidopsis thaliana GN=SYT1 PE=1 SV=2
trembl
ID A0A061DY83
description Synaptotagmin A isoform 1 OS=Theobroma cacao GN=TCM_006636 PE=4 SV=1
Gene Ontology
ID GO:0005623
description synaptotagmin a isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30299: 65824-78323 , PASA_asmbl_30300: 71394-72265 , PASA_asmbl_30301: 70264-70548 , PASA_asmbl_30302: 67145-67483 , PASA_asmbl_30304: 73348-73527
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002896_060 0.0 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
2 Hb_001051_090 0.0628655337 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
3 Hb_027380_030 0.0714348837 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
4 Hb_002092_100 0.0869658928 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
5 Hb_000453_140 0.089516711 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
6 Hb_001952_120 0.0911667538 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
7 Hb_002805_060 0.0926823073 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
8 Hb_001301_220 0.0928365643 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
9 Hb_000265_220 0.0996955025 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
10 Hb_000735_100 0.1037195478 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
11 Hb_002042_030 0.107519397 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
12 Hb_000718_070 0.1079415221 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001307_080 0.1082537982 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
14 Hb_005408_020 0.1085726075 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000076_260 0.1095907453 - - hypothetical protein GUITHDRAFT_149979 [Guillardia theta CCMP2712]
16 Hb_000661_020 0.1109840023 - - BnaC08g27190D [Brassica napus]
17 Hb_000599_170 0.1133156172 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]
18 Hb_003894_040 0.1148832249 - - nucleotide binding protein, putative [Ricinus communis]
19 Hb_000914_080 0.1153605307 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_002739_130 0.1154176802 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]

Gene co-expression network

sample Hb_002896_060 Hb_002896_060 Hb_001051_090 Hb_001051_090 Hb_002896_060--Hb_001051_090 Hb_027380_030 Hb_027380_030 Hb_002896_060--Hb_027380_030 Hb_002092_100 Hb_002092_100 Hb_002896_060--Hb_002092_100 Hb_000453_140 Hb_000453_140 Hb_002896_060--Hb_000453_140 Hb_001952_120 Hb_001952_120 Hb_002896_060--Hb_001952_120 Hb_002805_060 Hb_002805_060 Hb_002896_060--Hb_002805_060 Hb_001051_090--Hb_027380_030 Hb_000599_170 Hb_000599_170 Hb_001051_090--Hb_000599_170 Hb_001051_090--Hb_002805_060 Hb_004223_110 Hb_004223_110 Hb_001051_090--Hb_004223_110 Hb_001051_090--Hb_000453_140 Hb_027380_030--Hb_002805_060 Hb_027380_030--Hb_000599_170 Hb_027380_030--Hb_000453_140 Hb_006915_020 Hb_006915_020 Hb_027380_030--Hb_006915_020 Hb_000156_160 Hb_000156_160 Hb_002092_100--Hb_000156_160 Hb_005053_010 Hb_005053_010 Hb_002092_100--Hb_005053_010 Hb_002092_100--Hb_002805_060 Hb_002092_100--Hb_027380_030 Hb_016734_090 Hb_016734_090 Hb_002092_100--Hb_016734_090 Hb_002681_170 Hb_002681_170 Hb_002092_100--Hb_002681_170 Hb_003097_080 Hb_003097_080 Hb_000453_140--Hb_003097_080 Hb_000453_140--Hb_002092_100 Hb_000076_260 Hb_000076_260 Hb_000453_140--Hb_000076_260 Hb_007456_010 Hb_007456_010 Hb_000453_140--Hb_007456_010 Hb_001140_030 Hb_001140_030 Hb_001952_120--Hb_001140_030 Hb_005965_030 Hb_005965_030 Hb_001952_120--Hb_005965_030 Hb_000922_020 Hb_000922_020 Hb_001952_120--Hb_000922_020 Hb_001636_050 Hb_001636_050 Hb_001952_120--Hb_001636_050 Hb_010998_040 Hb_010998_040 Hb_001952_120--Hb_010998_040 Hb_002027_060 Hb_002027_060 Hb_001952_120--Hb_002027_060 Hb_002805_060--Hb_000599_170 Hb_003894_040 Hb_003894_040 Hb_002805_060--Hb_003894_040 Hb_002805_060--Hb_002681_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.7839 25.6612 33.6424 17.7503 56.2817 27.4671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0035 8.77384 8.86872 13.5647 14.741

CAGE analysis