Hb_002897_050

Information

Type -
Description -
Location Contig2897: 48266-51947
Sequence    

Annotation

kegg
ID rcu:RCOM_0690150
description hypothetical protein
nr
ID XP_012091116.1
description PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
swissprot
ID Q9FHK4
description Uncharacterized protein At5g05190 OS=Arabidopsis thaliana GN=Y-1 PE=1 SV=1
trembl
ID A0A067JQ36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30320: 47212-47421 , PASA_asmbl_30321: 50250-50520 , PASA_asmbl_30323: 51718-52232
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002897_050 0.0 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
2 Hb_000866_210 0.0724461086 transcription factor TF Family: BES1 PREDICTED: beta-amylase 7 isoform X1 [Jatropha curcas]
3 Hb_011631_010 0.0777470804 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
4 Hb_000638_280 0.0785846963 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
5 Hb_002107_060 0.0789384964 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
6 Hb_000084_240 0.0825089701 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
7 Hb_000045_260 0.0825806173 - - protein with unknown function [Ricinus communis]
8 Hb_000699_210 0.0846545299 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
9 Hb_052764_030 0.0876137572 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
10 Hb_009486_160 0.0877253384 - - PREDICTED: metacaspase-1 [Jatropha curcas]
11 Hb_001009_090 0.0927025562 - - CDK protein [Hevea brasiliensis]
12 Hb_004526_010 0.0969232231 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
13 Hb_001410_130 0.0975991912 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
14 Hb_011249_060 0.0994911674 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
15 Hb_000186_200 0.1014985549 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
16 Hb_000454_140 0.1028097119 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
17 Hb_001488_040 0.1052401144 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
18 Hb_005499_010 0.1060877423 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
19 Hb_004899_040 0.1075858897 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
20 Hb_002400_160 0.1103735966 - - Ubiquitin-protein ligase BRE1A, putative [Ricinus communis]

Gene co-expression network

sample Hb_002897_050 Hb_002897_050 Hb_000866_210 Hb_000866_210 Hb_002897_050--Hb_000866_210 Hb_011631_010 Hb_011631_010 Hb_002897_050--Hb_011631_010 Hb_000638_280 Hb_000638_280 Hb_002897_050--Hb_000638_280 Hb_002107_060 Hb_002107_060 Hb_002897_050--Hb_002107_060 Hb_000084_240 Hb_000084_240 Hb_002897_050--Hb_000084_240 Hb_000045_260 Hb_000045_260 Hb_002897_050--Hb_000045_260 Hb_052764_030 Hb_052764_030 Hb_000866_210--Hb_052764_030 Hb_009486_160 Hb_009486_160 Hb_000866_210--Hb_009486_160 Hb_000866_210--Hb_011631_010 Hb_003055_140 Hb_003055_140 Hb_000866_210--Hb_003055_140 Hb_011249_060 Hb_011249_060 Hb_000866_210--Hb_011249_060 Hb_011631_010--Hb_000045_260 Hb_005499_010 Hb_005499_010 Hb_011631_010--Hb_005499_010 Hb_011631_010--Hb_002107_060 Hb_011631_010--Hb_000638_280 Hb_011631_010--Hb_000084_240 Hb_000638_280--Hb_000045_260 Hb_000156_090 Hb_000156_090 Hb_000638_280--Hb_000156_090 Hb_000699_210 Hb_000699_210 Hb_000638_280--Hb_000699_210 Hb_000796_120 Hb_000796_120 Hb_000638_280--Hb_000796_120 Hb_002107_060--Hb_000084_240 Hb_002107_060--Hb_000045_260 Hb_002107_060--Hb_000638_280 Hb_000375_290 Hb_000375_290 Hb_002107_060--Hb_000375_290 Hb_000084_240--Hb_005499_010 Hb_000186_200 Hb_000186_200 Hb_000084_240--Hb_000186_200 Hb_000084_240--Hb_000045_260 Hb_000454_140 Hb_000454_140 Hb_000045_260--Hb_000454_140 Hb_000163_230 Hb_000163_230 Hb_000045_260--Hb_000163_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.94206 10.9048 5.4333 2.69328 1.80272 1.92732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.83671 2.00122 1.84081 2.61758 2.52668

CAGE analysis