Hb_002897_060

Information

Type -
Description -
Location Contig2897: 74847-75875
Sequence    

Annotation

kegg
ID rcu:RCOM_0690180
description hypothetical protein
nr
ID XP_012091215.1
description PREDICTED: uncharacterized protein LOC105649233 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S4H0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0690180 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002897_060 0.0 - - PREDICTED: uncharacterized protein LOC105649233 [Jatropha curcas]
2 Hb_002936_050 0.0976499243 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
3 Hb_002392_040 0.0990289848 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004882_020 0.1040434266 - - -
5 Hb_000983_100 0.1052851799 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
6 Hb_003943_030 0.1083037947 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
7 Hb_003151_050 0.1099944868 desease resistance Gene Name: MMR_HSR1 PREDICTED: uncharacterized protein LOC105639402 isoform X1 [Jatropha curcas]
8 Hb_001278_050 0.1116986059 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
9 Hb_002078_460 0.1139008329 - - -
10 Hb_000091_090 0.114317946 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
11 Hb_000622_040 0.1144135999 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
12 Hb_000419_040 0.1144151959 - - chorismate synthase [Hevea brasiliensis]
13 Hb_007229_060 0.1169230395 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
14 Hb_007666_020 0.1173667349 - - alkaline phytoceramidase, putative [Ricinus communis]
15 Hb_000861_040 0.1202664725 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
16 Hb_003408_030 0.1217162101 - - PREDICTED: protein YIF1B [Jatropha curcas]
17 Hb_000563_550 0.1221530688 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
18 Hb_001959_160 0.122936987 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
19 Hb_000922_270 0.1238572009 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
20 Hb_005357_150 0.125085379 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002897_060 Hb_002897_060 Hb_002936_050 Hb_002936_050 Hb_002897_060--Hb_002936_050 Hb_002392_040 Hb_002392_040 Hb_002897_060--Hb_002392_040 Hb_004882_020 Hb_004882_020 Hb_002897_060--Hb_004882_020 Hb_000983_100 Hb_000983_100 Hb_002897_060--Hb_000983_100 Hb_003943_030 Hb_003943_030 Hb_002897_060--Hb_003943_030 Hb_003151_050 Hb_003151_050 Hb_002897_060--Hb_003151_050 Hb_042729_010 Hb_042729_010 Hb_002936_050--Hb_042729_010 Hb_000419_040 Hb_000419_040 Hb_002936_050--Hb_000419_040 Hb_000003_840 Hb_000003_840 Hb_002936_050--Hb_000003_840 Hb_012522_030 Hb_012522_030 Hb_002936_050--Hb_012522_030 Hb_001278_050 Hb_001278_050 Hb_002936_050--Hb_001278_050 Hb_002392_040--Hb_000983_100 Hb_007229_060 Hb_007229_060 Hb_002392_040--Hb_007229_060 Hb_026988_020 Hb_026988_020 Hb_002392_040--Hb_026988_020 Hb_005000_290 Hb_005000_290 Hb_002392_040--Hb_005000_290 Hb_001366_220 Hb_001366_220 Hb_002392_040--Hb_001366_220 Hb_000809_040 Hb_000809_040 Hb_004882_020--Hb_000809_040 Hb_001437_240 Hb_001437_240 Hb_004882_020--Hb_001437_240 Hb_001981_090 Hb_001981_090 Hb_004882_020--Hb_001981_090 Hb_008695_190 Hb_008695_190 Hb_004882_020--Hb_008695_190 Hb_004882_020--Hb_001366_220 Hb_000072_280 Hb_000072_280 Hb_004882_020--Hb_000072_280 Hb_000983_100--Hb_007229_060 Hb_001473_130 Hb_001473_130 Hb_000983_100--Hb_001473_130 Hb_000091_090 Hb_000091_090 Hb_000983_100--Hb_000091_090 Hb_002025_320 Hb_002025_320 Hb_000983_100--Hb_002025_320 Hb_000983_100--Hb_026988_020 Hb_002527_070 Hb_002527_070 Hb_000983_100--Hb_002527_070 Hb_001959_160 Hb_001959_160 Hb_003943_030--Hb_001959_160 Hb_000749_250 Hb_000749_250 Hb_003943_030--Hb_000749_250 Hb_001232_130 Hb_001232_130 Hb_003943_030--Hb_001232_130 Hb_007429_030 Hb_007429_030 Hb_003943_030--Hb_007429_030 Hb_000156_100 Hb_000156_100 Hb_003943_030--Hb_000156_100 Hb_002290_040 Hb_002290_040 Hb_003943_030--Hb_002290_040 Hb_003151_050--Hb_000091_090 Hb_023386_080 Hb_023386_080 Hb_003151_050--Hb_023386_080 Hb_021650_030 Hb_021650_030 Hb_003151_050--Hb_021650_030 Hb_004108_050 Hb_004108_050 Hb_003151_050--Hb_004108_050 Hb_000429_170 Hb_000429_170 Hb_003151_050--Hb_000429_170 Hb_000665_040 Hb_000665_040 Hb_003151_050--Hb_000665_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.79149 0.338267 0.071002 0.0893751 0.926623 0.763559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.88777 1.23629 2.15397 0.473932 0.158839

CAGE analysis