Hb_002897_070

Information

Type transcription factor
Description TF Family: IWS1
Location Contig2897: 76081-77490
Sequence    

Annotation

kegg
ID rcu:RCOM_0690190
description transcription elongation factor s-II, putative
nr
ID XP_002520890.1
description transcription elongation factor s-II, putative [Ricinus communis]
swissprot
ID Q9ZVH8
description Transcription elongation factor TFIIS OS=Arabidopsis thaliana GN=TFIIS PE=1 SV=1
trembl
ID B9S4H1
description Transcription elongation factor s-II, putative OS=Ricinus communis GN=RCOM_0690190 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription elongation factor s-ii

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30324: 75877-77829
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002897_070 0.0 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
2 Hb_000803_180 0.1297124006 - - hexokinase [Manihot esculenta]
3 Hb_001322_020 0.1457204048 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
4 Hb_000617_310 0.1457363117 - - PREDICTED: cell cycle checkpoint control protein RAD9A [Jatropha curcas]
5 Hb_001863_140 0.148155896 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
6 Hb_004223_110 0.1590795942 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
7 Hb_000959_220 0.1609135037 - - zinc finger protein, putative [Ricinus communis]
8 Hb_000193_280 0.1617693517 - - vesicle transport V-snare protein vti1a, putative [Ricinus communis]
9 Hb_000139_220 0.1621816971 - - leucine rich repeat-containing protein, putative [Ricinus communis]
10 Hb_015292_040 0.1623811516 - - PREDICTED: myb-like protein X [Jatropha curcas]
11 Hb_044155_010 0.164860281 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
12 Hb_029695_080 0.1655161348 - - PREDICTED: NAD-dependent protein deacetylase SRT1 [Prunus mume]
13 Hb_172257_010 0.1658459201 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
14 Hb_000940_050 0.166070964 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
15 Hb_000703_160 0.1661245881 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
16 Hb_000327_330 0.1674682624 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001839_020 0.1677478506 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
18 Hb_000062_360 0.1690629522 - - PREDICTED: DNA polymerase alpha subunit B [Jatropha curcas]
19 Hb_005649_100 0.1699099506 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
20 Hb_000058_050 0.1707836283 - - PREDICTED: uncharacterized protein LOC105640877 [Jatropha curcas]

Gene co-expression network

sample Hb_002897_070 Hb_002897_070 Hb_000803_180 Hb_000803_180 Hb_002897_070--Hb_000803_180 Hb_001322_020 Hb_001322_020 Hb_002897_070--Hb_001322_020 Hb_000617_310 Hb_000617_310 Hb_002897_070--Hb_000617_310 Hb_001863_140 Hb_001863_140 Hb_002897_070--Hb_001863_140 Hb_004223_110 Hb_004223_110 Hb_002897_070--Hb_004223_110 Hb_000959_220 Hb_000959_220 Hb_002897_070--Hb_000959_220 Hb_000261_280 Hb_000261_280 Hb_000803_180--Hb_000261_280 Hb_152910_010 Hb_152910_010 Hb_000803_180--Hb_152910_010 Hb_002311_140 Hb_002311_140 Hb_000803_180--Hb_002311_140 Hb_172257_010 Hb_172257_010 Hb_000803_180--Hb_172257_010 Hb_004319_050 Hb_004319_050 Hb_000803_180--Hb_004319_050 Hb_003849_220 Hb_003849_220 Hb_000803_180--Hb_003849_220 Hb_001322_020--Hb_000959_220 Hb_003470_040 Hb_003470_040 Hb_001322_020--Hb_003470_040 Hb_029695_080 Hb_029695_080 Hb_001322_020--Hb_029695_080 Hb_000062_360 Hb_000062_360 Hb_001322_020--Hb_000062_360 Hb_003506_030 Hb_003506_030 Hb_001322_020--Hb_003506_030 Hb_014231_020 Hb_014231_020 Hb_001322_020--Hb_014231_020 Hb_001307_190 Hb_001307_190 Hb_000617_310--Hb_001307_190 Hb_000617_310--Hb_001863_140 Hb_039021_010 Hb_039021_010 Hb_000617_310--Hb_039021_010 Hb_000345_510 Hb_000345_510 Hb_000617_310--Hb_000345_510 Hb_004096_160 Hb_004096_160 Hb_000617_310--Hb_004096_160 Hb_002909_040 Hb_002909_040 Hb_000617_310--Hb_002909_040 Hb_002110_160 Hb_002110_160 Hb_001863_140--Hb_002110_160 Hb_006452_180 Hb_006452_180 Hb_001863_140--Hb_006452_180 Hb_178968_060 Hb_178968_060 Hb_001863_140--Hb_178968_060 Hb_000230_460 Hb_000230_460 Hb_001863_140--Hb_000230_460 Hb_010775_030 Hb_010775_030 Hb_001863_140--Hb_010775_030 Hb_003687_120 Hb_003687_120 Hb_001863_140--Hb_003687_120 Hb_007163_060 Hb_007163_060 Hb_004223_110--Hb_007163_060 Hb_000608_350 Hb_000608_350 Hb_004223_110--Hb_000608_350 Hb_008921_010 Hb_008921_010 Hb_004223_110--Hb_008921_010 Hb_004223_110--Hb_172257_010 Hb_000589_190 Hb_000589_190 Hb_004223_110--Hb_000589_190 Hb_005322_050 Hb_005322_050 Hb_004223_110--Hb_005322_050 Hb_005731_110 Hb_005731_110 Hb_000959_220--Hb_005731_110 Hb_000012_270 Hb_000012_270 Hb_000959_220--Hb_000012_270 Hb_065755_030 Hb_065755_030 Hb_000959_220--Hb_065755_030 Hb_011249_030 Hb_011249_030 Hb_000959_220--Hb_011249_030 Hb_006615_050 Hb_006615_050 Hb_000959_220--Hb_006615_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.675057 2.74237 5.90928 2.2323 3.30191 0.704401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.665535 1.5704 0.690484 1.30659 1.45855

CAGE analysis