Hb_002900_080

Information

Type -
Description -
Location Contig2900: 126464-130799
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20230g
description POPTRDRAFT_227220; hypothetical protein
nr
ID XP_012088157.1
description PREDICTED: E3 ubiquitin-protein ligase MARCH8-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LJK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01345 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase march8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30397: 126367-130784 , PASA_asmbl_30398: 130811-131173
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002900_080 0.0 - - PREDICTED: E3 ubiquitin-protein ligase MARCH8-like [Jatropha curcas]
2 Hb_000022_200 0.1223513046 - - PREDICTED: uncharacterized protein LOC105638292 [Jatropha curcas]
3 Hb_001205_250 0.1242924643 - - PREDICTED: uncharacterized protein LOC105643856 [Jatropha curcas]
4 Hb_000007_390 0.1247438171 - - hypothetical protein JCGZ_18250 [Jatropha curcas]
5 Hb_001227_130 0.124783803 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
6 Hb_007919_080 0.1256565163 - - PREDICTED: uncharacterized protein At1g76660 isoform X1 [Jatropha curcas]
7 Hb_000445_050 0.126500894 - - PREDICTED: DNA topoisomerase 2-binding protein 1 [Jatropha curcas]
8 Hb_030982_030 0.128909055 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
9 Hb_000152_790 0.1291740046 - - PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
10 Hb_000170_200 0.129293056 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
11 Hb_003943_050 0.1295210544 - - phosphoglucomutase, putative [Ricinus communis]
12 Hb_007951_040 0.1308359521 - - signal peptidase family protein [Populus trichocarpa]
13 Hb_000261_330 0.1309239228 - - PREDICTED: ER lumen protein-retaining receptor [Amborella trichopoda]
14 Hb_000963_040 0.1325518496 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
15 Hb_044662_060 0.1325863756 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
16 Hb_001136_070 0.1337296612 - - Transmembrane protein TPARL, putative [Ricinus communis]
17 Hb_003119_090 0.1364088557 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
18 Hb_002542_020 0.1366709733 - - PREDICTED: uncharacterized protein LOC105634003 isoform X1 [Jatropha curcas]
19 Hb_045770_010 0.137745501 - - ER lumen protein retaining receptor [Populus trichocarpa]
20 Hb_009049_020 0.1409250253 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002900_080 Hb_002900_080 Hb_000022_200 Hb_000022_200 Hb_002900_080--Hb_000022_200 Hb_001205_250 Hb_001205_250 Hb_002900_080--Hb_001205_250 Hb_000007_390 Hb_000007_390 Hb_002900_080--Hb_000007_390 Hb_001227_130 Hb_001227_130 Hb_002900_080--Hb_001227_130 Hb_007919_080 Hb_007919_080 Hb_002900_080--Hb_007919_080 Hb_000445_050 Hb_000445_050 Hb_002900_080--Hb_000445_050 Hb_000261_330 Hb_000261_330 Hb_000022_200--Hb_000261_330 Hb_045770_010 Hb_045770_010 Hb_000022_200--Hb_045770_010 Hb_002485_030 Hb_002485_030 Hb_000022_200--Hb_002485_030 Hb_001085_260 Hb_001085_260 Hb_000022_200--Hb_001085_260 Hb_007904_210 Hb_007904_210 Hb_000022_200--Hb_007904_210 Hb_001584_140 Hb_001584_140 Hb_001205_250--Hb_001584_140 Hb_001188_060 Hb_001188_060 Hb_001205_250--Hb_001188_060 Hb_000637_150 Hb_000637_150 Hb_001205_250--Hb_000637_150 Hb_001188_070 Hb_001188_070 Hb_001205_250--Hb_001188_070 Hb_000915_260 Hb_000915_260 Hb_001205_250--Hb_000915_260 Hb_017700_010 Hb_017700_010 Hb_001205_250--Hb_017700_010 Hb_000270_680 Hb_000270_680 Hb_000007_390--Hb_000270_680 Hb_003943_050 Hb_003943_050 Hb_000007_390--Hb_003943_050 Hb_000110_310 Hb_000110_310 Hb_000007_390--Hb_000110_310 Hb_000787_060 Hb_000787_060 Hb_000007_390--Hb_000787_060 Hb_001268_240 Hb_001268_240 Hb_000007_390--Hb_001268_240 Hb_009898_050 Hb_009898_050 Hb_000007_390--Hb_009898_050 Hb_001227_130--Hb_000445_050 Hb_000963_040 Hb_000963_040 Hb_001227_130--Hb_000963_040 Hb_003119_090 Hb_003119_090 Hb_001227_130--Hb_003119_090 Hb_000879_180 Hb_000879_180 Hb_001227_130--Hb_000879_180 Hb_011282_060 Hb_011282_060 Hb_001227_130--Hb_011282_060 Hb_002351_030 Hb_002351_030 Hb_001227_130--Hb_002351_030 Hb_000416_050 Hb_000416_050 Hb_007919_080--Hb_000416_050 Hb_000556_150 Hb_000556_150 Hb_007919_080--Hb_000556_150 Hb_001486_170 Hb_001486_170 Hb_007919_080--Hb_001486_170 Hb_002836_140 Hb_002836_140 Hb_007919_080--Hb_002836_140 Hb_007919_080--Hb_000022_200 Hb_002398_030 Hb_002398_030 Hb_000445_050--Hb_002398_030 Hb_007592_030 Hb_007592_030 Hb_000445_050--Hb_007592_030 Hb_008120_030 Hb_008120_030 Hb_000445_050--Hb_008120_030 Hb_009049_020 Hb_009049_020 Hb_000445_050--Hb_009049_020 Hb_002942_060 Hb_002942_060 Hb_000445_050--Hb_002942_060 Hb_058999_030 Hb_058999_030 Hb_000445_050--Hb_058999_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4717 2.96567 17.4908 17.9424 12.9324 8.30844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.422 5.42794 7.67288 9.69832 6.07119

CAGE analysis