Hb_002900_090

Information

Type transcription factor
Description TF Family: MYB
Location Contig2900: 132271-137523
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20220g
description POPTRDRAFT_227216; hypothetical protein
nr
ID XP_012088150.1
description PREDICTED: uncharacterized protein LOC105646817 [Jatropha curcas]
swissprot
ID Q9FDW1
description Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1
trembl
ID A0A067LKI8
description MYB family protein OS=Jatropha curcas GN=JCGZ_01344 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb domain protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30401: 132963-137314
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002900_090 0.0 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105646817 [Jatropha curcas]
2 Hb_033772_030 0.0529519779 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
3 Hb_006922_010 0.0543734958 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
4 Hb_005000_260 0.0624175188 - - recA family protein [Populus trichocarpa]
5 Hb_000739_100 0.0625777111 - - ku P80 DNA helicase, putative [Ricinus communis]
6 Hb_003464_090 0.0709163176 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
7 Hb_007163_120 0.0714602945 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
8 Hb_001840_090 0.0725533059 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
9 Hb_003370_030 0.0742214405 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
10 Hb_003544_060 0.0790234795 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
11 Hb_024621_040 0.0793301729 transcription factor TF Family: ERF hypothetical protein L484_014666 [Morus notabilis]
12 Hb_022256_020 0.0800276051 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Jatropha curcas]
13 Hb_000107_660 0.0808389922 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
14 Hb_008725_230 0.0811598999 - - PREDICTED: CTP synthase [Jatropha curcas]
15 Hb_002217_170 0.0811672138 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
16 Hb_000922_360 0.0826593574 - - -
17 Hb_000185_030 0.0836425733 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
18 Hb_000649_110 0.0842915699 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
19 Hb_000484_130 0.0848888755 - - splicing factor, putative [Ricinus communis]
20 Hb_000317_370 0.08582153 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]

Gene co-expression network

sample Hb_002900_090 Hb_002900_090 Hb_033772_030 Hb_033772_030 Hb_002900_090--Hb_033772_030 Hb_006922_010 Hb_006922_010 Hb_002900_090--Hb_006922_010 Hb_005000_260 Hb_005000_260 Hb_002900_090--Hb_005000_260 Hb_000739_100 Hb_000739_100 Hb_002900_090--Hb_000739_100 Hb_003464_090 Hb_003464_090 Hb_002900_090--Hb_003464_090 Hb_007163_120 Hb_007163_120 Hb_002900_090--Hb_007163_120 Hb_033772_030--Hb_007163_120 Hb_033772_030--Hb_006922_010 Hb_003370_030 Hb_003370_030 Hb_033772_030--Hb_003370_030 Hb_007765_110 Hb_007765_110 Hb_033772_030--Hb_007765_110 Hb_033772_030--Hb_003464_090 Hb_006922_010--Hb_005000_260 Hb_006922_010--Hb_003370_030 Hb_006922_010--Hb_007163_120 Hb_006922_010--Hb_000739_100 Hb_005000_260--Hb_003370_030 Hb_005000_260--Hb_000739_100 Hb_001408_040 Hb_001408_040 Hb_005000_260--Hb_001408_040 Hb_005000_260--Hb_007163_120 Hb_001157_090 Hb_001157_090 Hb_000739_100--Hb_001157_090 Hb_000703_150 Hb_000703_150 Hb_000739_100--Hb_000703_150 Hb_002686_030 Hb_002686_030 Hb_000739_100--Hb_002686_030 Hb_003464_090--Hb_007163_120 Hb_003849_110 Hb_003849_110 Hb_003464_090--Hb_003849_110 Hb_001359_050 Hb_001359_050 Hb_003464_090--Hb_001359_050 Hb_001408_140 Hb_001408_140 Hb_003464_090--Hb_001408_140 Hb_005653_090 Hb_005653_090 Hb_003464_090--Hb_005653_090 Hb_003464_090--Hb_007765_110 Hb_007163_120--Hb_003370_030 Hb_011491_010 Hb_011491_010 Hb_007163_120--Hb_011491_010 Hb_007163_120--Hb_007765_110 Hb_024621_040 Hb_024621_040 Hb_007163_120--Hb_024621_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.23509 10.2718 5.88568 6.62094 4.89629 5.43447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.96474 6.85467 7.80098 9.84608 3.80353

CAGE analysis