Hb_002900_120

Information

Type -
Description -
Location Contig2900: 165791-169985
Sequence    

Annotation

kegg
ID tcc:TCM_042615
description Nucleotide-sugar transporter family protein
nr
ID XP_012088054.1
description PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
swissprot
ID Q5XF09
description Probable sugar phosphate/phosphate translocator At3g11320 OS=Arabidopsis thaliana GN=At3g11320 PE=2 SV=1
trembl
ID A0A067LC90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01338 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable sugar phosphate phosphate translocator at3g11320

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30409: 165691-169613
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002900_120 0.0 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
2 Hb_002965_050 0.0630181255 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
3 Hb_002876_210 0.0722458619 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
4 Hb_000156_090 0.0742782066 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
5 Hb_000711_010 0.0836509359 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
6 Hb_003581_280 0.084018519 - - KINASE 2B family protein [Populus trichocarpa]
7 Hb_004774_020 0.0911747522 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
8 Hb_007416_260 0.0931368572 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
9 Hb_000699_210 0.0943930708 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
10 Hb_002387_040 0.0945598961 - - protein transporter, putative [Ricinus communis]
11 Hb_121089_020 0.0973008068 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
12 Hb_124677_040 0.0976468977 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
13 Hb_001729_020 0.0989835165 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
14 Hb_003018_030 0.1038736413 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
15 Hb_003428_090 0.1045525228 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
16 Hb_000815_310 0.1058605714 - - protein kinase, putative [Ricinus communis]
17 Hb_000261_280 0.1058724871 - - BnaA10g23810D [Brassica napus]
18 Hb_001376_010 0.1073994183 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
19 Hb_000638_280 0.1084526498 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
20 Hb_004108_240 0.1087693239 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]

Gene co-expression network

sample Hb_002900_120 Hb_002900_120 Hb_002965_050 Hb_002965_050 Hb_002900_120--Hb_002965_050 Hb_002876_210 Hb_002876_210 Hb_002900_120--Hb_002876_210 Hb_000156_090 Hb_000156_090 Hb_002900_120--Hb_000156_090 Hb_000711_010 Hb_000711_010 Hb_002900_120--Hb_000711_010 Hb_003581_280 Hb_003581_280 Hb_002900_120--Hb_003581_280 Hb_004774_020 Hb_004774_020 Hb_002900_120--Hb_004774_020 Hb_002965_050--Hb_000156_090 Hb_002965_050--Hb_002876_210 Hb_060094_010 Hb_060094_010 Hb_002965_050--Hb_060094_010 Hb_000815_310 Hb_000815_310 Hb_002965_050--Hb_000815_310 Hb_002965_050--Hb_000711_010 Hb_002876_210--Hb_000711_010 Hb_002876_210--Hb_000815_310 Hb_000452_030 Hb_000452_030 Hb_002876_210--Hb_000452_030 Hb_002217_090 Hb_002217_090 Hb_002876_210--Hb_002217_090 Hb_003018_030 Hb_003018_030 Hb_000156_090--Hb_003018_030 Hb_003428_090 Hb_003428_090 Hb_000156_090--Hb_003428_090 Hb_008725_050 Hb_008725_050 Hb_000156_090--Hb_008725_050 Hb_000638_280 Hb_000638_280 Hb_000156_090--Hb_000638_280 Hb_002349_030 Hb_002349_030 Hb_000711_010--Hb_002349_030 Hb_000012_240 Hb_000012_240 Hb_000711_010--Hb_000012_240 Hb_000711_010--Hb_060094_010 Hb_000045_260 Hb_000045_260 Hb_003581_280--Hb_000045_260 Hb_124677_040 Hb_124677_040 Hb_003581_280--Hb_124677_040 Hb_000421_230 Hb_000421_230 Hb_003581_280--Hb_000421_230 Hb_005332_140 Hb_005332_140 Hb_003581_280--Hb_005332_140 Hb_004108_240 Hb_004108_240 Hb_003581_280--Hb_004108_240 Hb_003925_040 Hb_003925_040 Hb_004774_020--Hb_003925_040 Hb_002042_170 Hb_002042_170 Hb_004774_020--Hb_002042_170 Hb_001439_230 Hb_001439_230 Hb_004774_020--Hb_001439_230 Hb_004774_020--Hb_124677_040 Hb_000699_210 Hb_000699_210 Hb_004774_020--Hb_000699_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.38755 36.6537 26.6081 23.7698 5.39915 4.24102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.89289 10.8232 8.02484 11.0683 15.1989

CAGE analysis