Hb_002900_160

Information

Type -
Description -
Location Contig2900: 192605-194874
Sequence    

Annotation

kegg
ID rcu:RCOM_0498270
description hypothetical protein
nr
ID XP_012088078.1
description PREDICTED: immediate early response 3-interacting protein 1-like [Jatropha curcas]
swissprot
ID Q3B8G7
description Immediate early response 3-interacting protein 1 OS=Xenopus laevis GN=ier3ip1 PE=3 SV=1
trembl
ID D7TMI4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g03230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30414: 192700-194954
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002900_160 0.0 - - PREDICTED: immediate early response 3-interacting protein 1-like [Jatropha curcas]
2 Hb_000000_170 0.0746418422 - - defender against cell death, putative [Ricinus communis]
3 Hb_002783_270 0.0865959245 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
4 Hb_003018_020 0.0867987884 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
5 Hb_004052_020 0.087156418 - - Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
6 Hb_000699_160 0.0883539711 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
7 Hb_007044_130 0.0923522196 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
8 Hb_134949_020 0.093040805 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
9 Hb_000630_060 0.0930555762 - - PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Jatropha curcas]
10 Hb_002289_120 0.0932689875 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
11 Hb_003226_100 0.0944200249 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
12 Hb_128048_010 0.0954167573 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
13 Hb_004157_030 0.0968375917 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
14 Hb_012022_120 0.097582591 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]
15 Hb_182305_020 0.0976333349 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Jatropha curcas]
16 Hb_002811_260 0.0985503212 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
17 Hb_000062_650 0.099216367 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
18 Hb_003185_110 0.0992375042 - - PREDICTED: cytochrome b-c1 complex subunit 7-2 [Nelumbo nucifera]
19 Hb_000046_560 0.0993895489 - - PREDICTED: uncharacterized protein LOC105118519 [Populus euphratica]
20 Hb_000506_070 0.0993938631 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]

Gene co-expression network

sample Hb_002900_160 Hb_002900_160 Hb_000000_170 Hb_000000_170 Hb_002900_160--Hb_000000_170 Hb_002783_270 Hb_002783_270 Hb_002900_160--Hb_002783_270 Hb_003018_020 Hb_003018_020 Hb_002900_160--Hb_003018_020 Hb_004052_020 Hb_004052_020 Hb_002900_160--Hb_004052_020 Hb_000699_160 Hb_000699_160 Hb_002900_160--Hb_000699_160 Hb_007044_130 Hb_007044_130 Hb_002900_160--Hb_007044_130 Hb_000505_140 Hb_000505_140 Hb_000000_170--Hb_000505_140 Hb_128048_010 Hb_128048_010 Hb_000000_170--Hb_128048_010 Hb_012022_120 Hb_012022_120 Hb_000000_170--Hb_012022_120 Hb_001184_090 Hb_001184_090 Hb_000000_170--Hb_001184_090 Hb_000926_300 Hb_000926_300 Hb_000000_170--Hb_000926_300 Hb_002783_270--Hb_007044_130 Hb_000046_560 Hb_000046_560 Hb_002783_270--Hb_000046_560 Hb_006925_040 Hb_006925_040 Hb_002783_270--Hb_006925_040 Hb_003894_070 Hb_003894_070 Hb_002783_270--Hb_003894_070 Hb_003058_080 Hb_003058_080 Hb_002783_270--Hb_003058_080 Hb_001341_090 Hb_001341_090 Hb_002783_270--Hb_001341_090 Hb_003226_100 Hb_003226_100 Hb_003018_020--Hb_003226_100 Hb_004157_030 Hb_004157_030 Hb_003018_020--Hb_004157_030 Hb_174865_010 Hb_174865_010 Hb_003018_020--Hb_174865_010 Hb_000506_070 Hb_000506_070 Hb_003018_020--Hb_000506_070 Hb_001141_140 Hb_001141_140 Hb_003018_020--Hb_001141_140 Hb_000836_470 Hb_000836_470 Hb_003018_020--Hb_000836_470 Hb_012753_230 Hb_012753_230 Hb_004052_020--Hb_012753_230 Hb_000057_070 Hb_000057_070 Hb_004052_020--Hb_000057_070 Hb_004052_020--Hb_003058_080 Hb_012573_070 Hb_012573_070 Hb_004052_020--Hb_012573_070 Hb_000948_210 Hb_000948_210 Hb_004052_020--Hb_000948_210 Hb_010672_060 Hb_010672_060 Hb_000699_160--Hb_010672_060 Hb_005063_050 Hb_005063_050 Hb_000699_160--Hb_005063_050 Hb_001221_310 Hb_001221_310 Hb_000699_160--Hb_001221_310 Hb_143496_010 Hb_143496_010 Hb_000699_160--Hb_143496_010 Hb_000699_160--Hb_012022_120 Hb_002830_020 Hb_002830_020 Hb_000699_160--Hb_002830_020 Hb_007044_130--Hb_001141_140 Hb_000260_550 Hb_000260_550 Hb_007044_130--Hb_000260_550 Hb_000062_650 Hb_000062_650 Hb_007044_130--Hb_000062_650 Hb_007044_130--Hb_003894_070 Hb_007044_130--Hb_006925_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4018 3.20127 10.9188 13.2457 11.5209 11.1433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.6835 35.7328 7.65528 7.11277 4.01359

CAGE analysis