Hb_002900_180

Information

Type transcription factor
Description TF Family: LIM
Location Contig2900: 212121-214541
Sequence    

Annotation

kegg
ID rcu:RCOM_0498430
description Pollen-specific protein SF3, putative
nr
ID ACX47456.1
description LIM1 [Hevea brasiliensis]
swissprot
ID Q9M047
description LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana GN=WLIM2B PE=1 SV=1
trembl
ID D0EWD7
description LIM1 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0008270
description lim domain-containing protein wlim2b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30415: 206817-214399
cDNA
(Sanger)
(ID:Location)		 026_I24.ab1: 207270-214399

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002900_180 0.0 transcription factor TF Family: LIM LIM1 [Hevea brasiliensis]
2 Hb_000462_070 0.11910086 - - PREDICTED: probable pectinesterase 15 [Jatropha curcas]
3 Hb_000003_110 0.1198577046 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
4 Hb_000260_110 0.1227515294 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
5 Hb_000890_120 0.1252970125 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
6 Hb_000017_250 0.1384960091 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
7 Hb_000540_160 0.1394821584 - - PREDICTED: mitogen-activated protein kinase homolog NTF6 [Jatropha curcas]
8 Hb_010883_180 0.1458368532 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
9 Hb_000563_140 0.1483704053 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
10 Hb_001616_100 0.1491339679 - - PREDICTED: cell division control protein 45 homolog [Jatropha curcas]
11 Hb_005253_020 0.1509509172 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
12 Hb_002292_080 0.1519832265 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
13 Hb_003728_110 0.1545370616 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]
14 Hb_000984_130 0.1564344657 - - tubulin [Ornithogalum longebracteatum]
15 Hb_002701_030 0.157417691 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
16 Hb_000093_090 0.1624506028 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
17 Hb_085829_010 0.1645935029 - - PREDICTED: homeobox protein 2-like [Jatropha curcas]
18 Hb_179960_010 0.1650072504 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Jatropha curcas]
19 Hb_000157_020 0.1655107657 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002490_030 0.1662326573 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002900_180 Hb_002900_180 Hb_000462_070 Hb_000462_070 Hb_002900_180--Hb_000462_070 Hb_000003_110 Hb_000003_110 Hb_002900_180--Hb_000003_110 Hb_000260_110 Hb_000260_110 Hb_002900_180--Hb_000260_110 Hb_000890_120 Hb_000890_120 Hb_002900_180--Hb_000890_120 Hb_000017_250 Hb_000017_250 Hb_002900_180--Hb_000017_250 Hb_000540_160 Hb_000540_160 Hb_002900_180--Hb_000540_160 Hb_000984_130 Hb_000984_130 Hb_000462_070--Hb_000984_130 Hb_000997_080 Hb_000997_080 Hb_000462_070--Hb_000997_080 Hb_000413_120 Hb_000413_120 Hb_000462_070--Hb_000413_120 Hb_000462_070--Hb_000260_110 Hb_000462_070--Hb_000017_250 Hb_061222_010 Hb_061222_010 Hb_000003_110--Hb_061222_010 Hb_005784_060 Hb_005784_060 Hb_000003_110--Hb_005784_060 Hb_005253_020 Hb_005253_020 Hb_000003_110--Hb_005253_020 Hb_002292_080 Hb_002292_080 Hb_000003_110--Hb_002292_080 Hb_001616_100 Hb_001616_100 Hb_000003_110--Hb_001616_100 Hb_002233_160 Hb_002233_160 Hb_000260_110--Hb_002233_160 Hb_000011_280 Hb_000011_280 Hb_000260_110--Hb_000011_280 Hb_010883_180 Hb_010883_180 Hb_000260_110--Hb_010883_180 Hb_000069_560 Hb_000069_560 Hb_000260_110--Hb_000069_560 Hb_000157_020 Hb_000157_020 Hb_000890_120--Hb_000157_020 Hb_000086_510 Hb_000086_510 Hb_000890_120--Hb_000086_510 Hb_085829_010 Hb_085829_010 Hb_000890_120--Hb_085829_010 Hb_000890_120--Hb_000017_250 Hb_004705_060 Hb_004705_060 Hb_000890_120--Hb_004705_060 Hb_002701_030 Hb_002701_030 Hb_000017_250--Hb_002701_030 Hb_000017_250--Hb_004705_060 Hb_000017_250--Hb_085829_010 Hb_000853_250 Hb_000853_250 Hb_000017_250--Hb_000853_250 Hb_000162_190 Hb_000162_190 Hb_000017_250--Hb_000162_190 Hb_025787_020 Hb_025787_020 Hb_000017_250--Hb_025787_020 Hb_003728_110 Hb_003728_110 Hb_000540_160--Hb_003728_110 Hb_000028_490 Hb_000028_490 Hb_000540_160--Hb_000028_490 Hb_124951_020 Hb_124951_020 Hb_000540_160--Hb_124951_020 Hb_002490_030 Hb_002490_030 Hb_000540_160--Hb_002490_030 Hb_004147_070 Hb_004147_070 Hb_000540_160--Hb_004147_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.20301 7.45979 39.773 142.225 0.97589 1.60523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.12262 4.72141 4.95202 18.4054 15.5317

CAGE analysis