Hb_002900_190

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig2900: 217126-219454
Sequence    

Annotation

kegg
ID rcu:RCOM_0498420
description transcription factor, putative
nr
ID XP_012088032.1
description PREDICTED: trihelix transcription factor GTL1 [Jatropha curcas]
swissprot
ID Q39117
description Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1
trembl
ID A0A067L8R1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01336 PE=4 SV=1
Gene Ontology
ID GO:0003682
description trihelix transcription factor gtl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30417: 217173-217607 , PASA_asmbl_30418: 217747-219030 , PASA_asmbl_30419: 219085-219524
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002900_190 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GTL1 [Jatropha curcas]
2 Hb_001771_140 0.0651770461 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
3 Hb_001386_120 0.0780432434 - - PREDICTED: yrdC domain-containing protein, mitochondrial [Jatropha curcas]
4 Hb_015746_010 0.0836227956 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]
5 Hb_001604_010 0.0855575229 - - 14-3-3 protein, putative [Ricinus communis]
6 Hb_010931_120 0.0857357828 - - myosin heavy chain-related family protein [Populus trichocarpa]
7 Hb_012022_030 0.0871232646 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
8 Hb_000853_420 0.0918370799 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_039946_020 0.0938256041 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004491_010 0.0938680284 - - 60S ribosomal protein L51, putative [Ricinus communis]
11 Hb_005539_030 0.0954646502 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
12 Hb_000483_360 0.0963787358 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
13 Hb_001936_020 0.0976937436 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
14 Hb_000638_080 0.0989100547 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
15 Hb_000061_370 0.0994553495 - - PREDICTED: zinc finger RNA-binding protein [Vitis vinifera]
16 Hb_000629_010 0.0995949566 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
17 Hb_000445_420 0.1019057317 - - protein transporter, putative [Ricinus communis]
18 Hb_002603_120 0.1026849167 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
19 Hb_011218_040 0.1030945407 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
20 Hb_004055_030 0.103586765 - - casein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002900_190 Hb_002900_190 Hb_001771_140 Hb_001771_140 Hb_002900_190--Hb_001771_140 Hb_001386_120 Hb_001386_120 Hb_002900_190--Hb_001386_120 Hb_015746_010 Hb_015746_010 Hb_002900_190--Hb_015746_010 Hb_001604_010 Hb_001604_010 Hb_002900_190--Hb_001604_010 Hb_010931_120 Hb_010931_120 Hb_002900_190--Hb_010931_120 Hb_012022_030 Hb_012022_030 Hb_002900_190--Hb_012022_030 Hb_007894_140 Hb_007894_140 Hb_001771_140--Hb_007894_140 Hb_000020_190 Hb_000020_190 Hb_001771_140--Hb_000020_190 Hb_006922_100 Hb_006922_100 Hb_001771_140--Hb_006922_100 Hb_001322_190 Hb_001322_190 Hb_001771_140--Hb_001322_190 Hb_001771_140--Hb_010931_120 Hb_004491_010 Hb_004491_010 Hb_001386_120--Hb_004491_010 Hb_001584_330 Hb_001584_330 Hb_001386_120--Hb_001584_330 Hb_000638_080 Hb_000638_080 Hb_001386_120--Hb_000638_080 Hb_001386_120--Hb_012022_030 Hb_001386_120--Hb_001604_010 Hb_002043_190 Hb_002043_190 Hb_015746_010--Hb_002043_190 Hb_000327_120 Hb_000327_120 Hb_015746_010--Hb_000327_120 Hb_004048_070 Hb_004048_070 Hb_015746_010--Hb_004048_070 Hb_000853_170 Hb_000853_170 Hb_015746_010--Hb_000853_170 Hb_001571_040 Hb_001571_040 Hb_015746_010--Hb_001571_040 Hb_000061_370 Hb_000061_370 Hb_015746_010--Hb_000061_370 Hb_007441_120 Hb_007441_120 Hb_001604_010--Hb_007441_120 Hb_001604_010--Hb_015746_010 Hb_028872_140 Hb_028872_140 Hb_001604_010--Hb_028872_140 Hb_001248_130 Hb_001248_130 Hb_001604_010--Hb_001248_130 Hb_000120_950 Hb_000120_950 Hb_001604_010--Hb_000120_950 Hb_001604_010--Hb_001584_330 Hb_004055_030 Hb_004055_030 Hb_010931_120--Hb_004055_030 Hb_011671_430 Hb_011671_430 Hb_010931_120--Hb_011671_430 Hb_000445_420 Hb_000445_420 Hb_010931_120--Hb_000445_420 Hb_005993_020 Hb_005993_020 Hb_010931_120--Hb_005993_020 Hb_002131_020 Hb_002131_020 Hb_010931_120--Hb_002131_020 Hb_000260_220 Hb_000260_220 Hb_010931_120--Hb_000260_220 Hb_039946_020 Hb_039946_020 Hb_012022_030--Hb_039946_020 Hb_002137_020 Hb_002137_020 Hb_012022_030--Hb_002137_020 Hb_004223_280 Hb_004223_280 Hb_012022_030--Hb_004223_280 Hb_000613_140 Hb_000613_140 Hb_012022_030--Hb_000613_140 Hb_000877_060 Hb_000877_060 Hb_012022_030--Hb_000877_060 Hb_000571_120 Hb_000571_120 Hb_012022_030--Hb_000571_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.06084 4.43515 3.54335 1.86375 6.43828 6.34103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.39321 5.13544 6.55788 6.61785 2.25487

CAGE analysis