Hb_002902_110

Information

Type -
Description -
Location Contig2902: 120692-124758
Sequence    

Annotation

kegg
ID pvu:PHAVU_002G012700g
description hypothetical protein
nr
ID XP_012079370.1
description PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
swissprot
ID P28523
description Casein kinase II subunit alpha OS=Zea mays GN=ACK2 PE=1 SV=1
trembl
ID A0A067KJN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12510 PE=4 SV=1
Gene Ontology
ID GO:0009536
description casein kinase ii alpha subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30429: 120836-122726 , PASA_asmbl_30430: 122727-123584
cDNA
(Sanger)
(ID:Location)		 019_D06.ab1: 120944-126683

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002902_110 0.0 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
2 Hb_000221_270 0.0998412533 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
3 Hb_000914_070 0.1013427232 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
4 Hb_012490_040 0.1016077587 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
5 Hb_002154_050 0.1055781738 - - RNA binding protein, putative [Ricinus communis]
6 Hb_004055_140 0.1058715833 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
7 Hb_071736_010 0.1066725478 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
8 Hb_002686_270 0.1080998705 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005539_290 0.108244275 - - unknown [Lotus japonicus]
10 Hb_011310_070 0.1090226867 - - ADP,ATP carrier protein, putative [Ricinus communis]
11 Hb_008066_010 0.1112775144 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
12 Hb_002023_020 0.1126248378 - - PREDICTED: aladin isoform X2 [Jatropha curcas]
13 Hb_015057_010 0.1126669028 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
14 Hb_000152_140 0.1127853919 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
15 Hb_000671_100 0.1161708614 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
16 Hb_000069_460 0.1165933823 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
17 Hb_001454_140 0.1175139104 - - protein arginine n-methyltransferase, putative [Ricinus communis]
18 Hb_009558_020 0.1182198159 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
19 Hb_002810_030 0.1183100152 - - hypothetical protein VITISV_015705 [Vitis vinifera]
20 Hb_000364_150 0.118341511 - - -

Gene co-expression network

sample Hb_002902_110 Hb_002902_110 Hb_000221_270 Hb_000221_270 Hb_002902_110--Hb_000221_270 Hb_000914_070 Hb_000914_070 Hb_002902_110--Hb_000914_070 Hb_012490_040 Hb_012490_040 Hb_002902_110--Hb_012490_040 Hb_002154_050 Hb_002154_050 Hb_002902_110--Hb_002154_050 Hb_004055_140 Hb_004055_140 Hb_002902_110--Hb_004055_140 Hb_071736_010 Hb_071736_010 Hb_002902_110--Hb_071736_010 Hb_008066_010 Hb_008066_010 Hb_000221_270--Hb_008066_010 Hb_000069_460 Hb_000069_460 Hb_000221_270--Hb_000069_460 Hb_005548_010 Hb_005548_010 Hb_000221_270--Hb_005548_010 Hb_000051_110 Hb_000051_110 Hb_000221_270--Hb_000051_110 Hb_010710_030 Hb_010710_030 Hb_000221_270--Hb_010710_030 Hb_000364_150 Hb_000364_150 Hb_000914_070--Hb_000364_150 Hb_000914_070--Hb_012490_040 Hb_005117_010 Hb_005117_010 Hb_000914_070--Hb_005117_010 Hb_001266_080 Hb_001266_080 Hb_000914_070--Hb_001266_080 Hb_000347_200 Hb_000347_200 Hb_000914_070--Hb_000347_200 Hb_000914_070--Hb_004055_140 Hb_034271_030 Hb_034271_030 Hb_012490_040--Hb_034271_030 Hb_000122_130 Hb_000122_130 Hb_012490_040--Hb_000122_130 Hb_003195_060 Hb_003195_060 Hb_012490_040--Hb_003195_060 Hb_049675_010 Hb_049675_010 Hb_012490_040--Hb_049675_010 Hb_002890_340 Hb_002890_340 Hb_012490_040--Hb_002890_340 Hb_005779_100 Hb_005779_100 Hb_002154_050--Hb_005779_100 Hb_005539_290 Hb_005539_290 Hb_002154_050--Hb_005539_290 Hb_006602_010 Hb_006602_010 Hb_002154_050--Hb_006602_010 Hb_006602_020 Hb_006602_020 Hb_002154_050--Hb_006602_020 Hb_001473_130 Hb_001473_130 Hb_002154_050--Hb_001473_130 Hb_000479_330 Hb_000479_330 Hb_002154_050--Hb_000479_330 Hb_002616_050 Hb_002616_050 Hb_004055_140--Hb_002616_050 Hb_028872_140 Hb_028872_140 Hb_004055_140--Hb_028872_140 Hb_033642_010 Hb_033642_010 Hb_004055_140--Hb_033642_010 Hb_004055_140--Hb_005117_010 Hb_001454_140 Hb_001454_140 Hb_004055_140--Hb_001454_140 Hb_004055_140--Hb_001266_080 Hb_005883_050 Hb_005883_050 Hb_071736_010--Hb_005883_050 Hb_005754_060 Hb_005754_060 Hb_071736_010--Hb_005754_060 Hb_000023_140 Hb_000023_140 Hb_071736_010--Hb_000023_140 Hb_071736_010--Hb_001266_080 Hb_071736_010--Hb_002616_050 Hb_001855_010 Hb_001855_010 Hb_071736_010--Hb_001855_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
144.433 35.7036 15.9778 59.2743 103.506 282.99
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
188.377 95.998 192.006 108.048 31.0589

CAGE analysis