Hb_002903_070

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig2903: 95488-96402
Sequence    

Annotation

kegg
ID rcu:RCOM_0935180
description zinc finger protein, putative
nr
ID XP_002519023.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q8LDR0
description Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4 PE=2 SV=2
trembl
ID B9RZ54
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0935180 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002903_070 0.0 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
2 Hb_000427_030 0.0911519922 - - conserved hypothetical protein [Ricinus communis]
3 Hb_011174_070 0.0928488605 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
4 Hb_002422_060 0.1088513795 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
5 Hb_003747_240 0.1102975784 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
6 Hb_003057_120 0.1126049908 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
7 Hb_006551_010 0.1217825488 - - electron transporter, putative [Ricinus communis]
8 Hb_002662_100 0.123430919 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
9 Hb_000809_040 0.1244754396 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
10 Hb_000805_090 0.1244759772 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
11 Hb_001767_010 0.1269563728 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
12 Hb_000313_380 0.1282477899 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001366_220 0.129068232 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003404_030 0.1307878969 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
15 Hb_000592_050 0.1325467863 - - PREDICTED: golgin candidate 2 [Jatropha curcas]
16 Hb_003001_030 0.1332000416 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
17 Hb_000622_310 0.1340843966 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
18 Hb_005357_150 0.1350464418 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000387_080 0.1369761943 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
20 Hb_000124_020 0.1385535822 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]

Gene co-expression network

sample Hb_002903_070 Hb_002903_070 Hb_000427_030 Hb_000427_030 Hb_002903_070--Hb_000427_030 Hb_011174_070 Hb_011174_070 Hb_002903_070--Hb_011174_070 Hb_002422_060 Hb_002422_060 Hb_002903_070--Hb_002422_060 Hb_003747_240 Hb_003747_240 Hb_002903_070--Hb_003747_240 Hb_003057_120 Hb_003057_120 Hb_002903_070--Hb_003057_120 Hb_006551_010 Hb_006551_010 Hb_002903_070--Hb_006551_010 Hb_000427_030--Hb_011174_070 Hb_001767_010 Hb_001767_010 Hb_000427_030--Hb_001767_010 Hb_004800_160 Hb_004800_160 Hb_000427_030--Hb_004800_160 Hb_000025_480 Hb_000025_480 Hb_000427_030--Hb_000025_480 Hb_000427_030--Hb_003057_120 Hb_011174_070--Hb_003057_120 Hb_000387_080 Hb_000387_080 Hb_011174_070--Hb_000387_080 Hb_000057_060 Hb_000057_060 Hb_011174_070--Hb_000057_060 Hb_000805_090 Hb_000805_090 Hb_011174_070--Hb_000805_090 Hb_011174_070--Hb_000025_480 Hb_003404_030 Hb_003404_030 Hb_002422_060--Hb_003404_030 Hb_000161_030 Hb_000161_030 Hb_002422_060--Hb_000161_030 Hb_000172_400 Hb_000172_400 Hb_002422_060--Hb_000172_400 Hb_000230_110 Hb_000230_110 Hb_002422_060--Hb_000230_110 Hb_002477_260 Hb_002477_260 Hb_002422_060--Hb_002477_260 Hb_000809_040 Hb_000809_040 Hb_003747_240--Hb_000809_040 Hb_000163_290 Hb_000163_290 Hb_003747_240--Hb_000163_290 Hb_003747_240--Hb_011174_070 Hb_006499_010 Hb_006499_010 Hb_003747_240--Hb_006499_010 Hb_000138_040 Hb_000138_040 Hb_003747_240--Hb_000138_040 Hb_003747_240--Hb_003404_030 Hb_003057_120--Hb_000387_080 Hb_005357_150 Hb_005357_150 Hb_003057_120--Hb_005357_150 Hb_001366_220 Hb_001366_220 Hb_003057_120--Hb_001366_220 Hb_001981_090 Hb_001981_090 Hb_003057_120--Hb_001981_090 Hb_003057_120--Hb_000805_090 Hb_000258_430 Hb_000258_430 Hb_006551_010--Hb_000258_430 Hb_000313_380 Hb_000313_380 Hb_006551_010--Hb_000313_380 Hb_006551_010--Hb_001981_090 Hb_006551_010--Hb_000805_090 Hb_001140_200 Hb_001140_200 Hb_006551_010--Hb_001140_200 Hb_006551_010--Hb_011174_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.7649 22.5627 1.82285 11.2698 88.3286 60.023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.5339 44.3487 110.88 8.22829 4.61878

CAGE analysis