Hb_002903_100

Information

Type -
Description -
Location Contig2903: 124207-125559
Sequence    

Annotation

kegg
ID pop:POPTR_0011s04750g
description POPTRDRAFT_890037; hypothetical protein
nr
ID XP_002316629.2
description hypothetical protein POPTR_0011s04750g [Populus trichocarpa]
swissprot
ID P0C8Q4
description Uncharacterized protein At4g19900 OS=Arabidopsis thaliana GN=At4g19900 PE=2 SV=1
trembl
ID B9HYL1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s04750g PE=4 SV=2
Gene Ontology
ID GO:0050512
description lactosylceramide 4-alpha-galactosyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002903_100 0.0 - - hypothetical protein POPTR_0011s04750g [Populus trichocarpa]
2 Hb_007793_050 0.1722809104 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009808_010 0.1846250631 - - Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao]
4 Hb_000074_100 0.2023860198 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001347_050 0.2030791647 - - serine/threonine protein kinase, putative [Ricinus communis]
6 Hb_001847_050 0.2051074731 - - hypothetical protein CISIN_1g019843mg [Citrus sinensis]
7 Hb_012940_030 0.2065643384 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
8 Hb_001268_340 0.2121961282 - - Actin, putative [Ricinus communis]
9 Hb_008119_030 0.2181122566 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
10 Hb_004003_030 0.2183946179 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000359_290 0.220806066 - - Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis]
12 Hb_001195_130 0.2212565243 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000256_080 0.2230390997 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
14 Hb_000370_070 0.2235017403 - - PREDICTED: subtilisin-like protease-like [Citrus sinensis]
15 Hb_000175_230 0.2240843507 - - PREDICTED: protein LURP-one-related 5 [Jatropha curcas]
16 Hb_000258_040 0.2245961361 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
17 Hb_004032_160 0.2255662249 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
18 Hb_004917_040 0.2273807455 - - hypothetical protein POPTR_0009s03470g [Populus trichocarpa]
19 Hb_006405_030 0.228065751 - - hypothetical protein VITISV_043238 [Vitis vinifera]
20 Hb_000191_050 0.2293673119 - - hypothetical protein POPTR_0006s14610g [Populus trichocarpa]

Gene co-expression network

sample Hb_002903_100 Hb_002903_100 Hb_007793_050 Hb_007793_050 Hb_002903_100--Hb_007793_050 Hb_009808_010 Hb_009808_010 Hb_002903_100--Hb_009808_010 Hb_000074_100 Hb_000074_100 Hb_002903_100--Hb_000074_100 Hb_001347_050 Hb_001347_050 Hb_002903_100--Hb_001347_050 Hb_001847_050 Hb_001847_050 Hb_002903_100--Hb_001847_050 Hb_012940_030 Hb_012940_030 Hb_002903_100--Hb_012940_030 Hb_004003_030 Hb_004003_030 Hb_007793_050--Hb_004003_030 Hb_001268_340 Hb_001268_340 Hb_007793_050--Hb_001268_340 Hb_004032_160 Hb_004032_160 Hb_007793_050--Hb_004032_160 Hb_001148_060 Hb_001148_060 Hb_007793_050--Hb_001148_060 Hb_000030_160 Hb_000030_160 Hb_007793_050--Hb_000030_160 Hb_002217_320 Hb_002217_320 Hb_009808_010--Hb_002217_320 Hb_000042_110 Hb_000042_110 Hb_009808_010--Hb_000042_110 Hb_006925_050 Hb_006925_050 Hb_009808_010--Hb_006925_050 Hb_006829_070 Hb_006829_070 Hb_009808_010--Hb_006829_070 Hb_008119_030 Hb_008119_030 Hb_009808_010--Hb_008119_030 Hb_009808_010--Hb_001847_050 Hb_000622_350 Hb_000622_350 Hb_000074_100--Hb_000622_350 Hb_002660_110 Hb_002660_110 Hb_000074_100--Hb_002660_110 Hb_000359_290 Hb_000359_290 Hb_000074_100--Hb_000359_290 Hb_000002_480 Hb_000002_480 Hb_000074_100--Hb_000002_480 Hb_000890_230 Hb_000890_230 Hb_000074_100--Hb_000890_230 Hb_000720_080 Hb_000720_080 Hb_000074_100--Hb_000720_080 Hb_000679_100 Hb_000679_100 Hb_001347_050--Hb_000679_100 Hb_000193_300 Hb_000193_300 Hb_001347_050--Hb_000193_300 Hb_000258_040 Hb_000258_040 Hb_001347_050--Hb_000258_040 Hb_003209_130 Hb_003209_130 Hb_001347_050--Hb_003209_130 Hb_000138_060 Hb_000138_060 Hb_001347_050--Hb_000138_060 Hb_000085_260 Hb_000085_260 Hb_001347_050--Hb_000085_260 Hb_001847_050--Hb_002217_320 Hb_012807_150 Hb_012807_150 Hb_001847_050--Hb_012807_150 Hb_001195_130 Hb_001195_130 Hb_001847_050--Hb_001195_130 Hb_001847_050--Hb_006925_050 Hb_004730_020 Hb_004730_020 Hb_001847_050--Hb_004730_020 Hb_000342_170 Hb_000342_170 Hb_001847_050--Hb_000342_170 Hb_000115_080 Hb_000115_080 Hb_012940_030--Hb_000115_080 Hb_000152_370 Hb_000152_370 Hb_012940_030--Hb_000152_370 Hb_002732_030 Hb_002732_030 Hb_012940_030--Hb_002732_030 Hb_005276_060 Hb_005276_060 Hb_012940_030--Hb_005276_060 Hb_059480_010 Hb_059480_010 Hb_012940_030--Hb_059480_010 Hb_001087_030 Hb_001087_030 Hb_012940_030--Hb_001087_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.262389 0.187078 0.271545 0.519834 0.0144573 0.0857207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.140802 0.055383 0.103615 0.0110701 0.172997

CAGE analysis