Hb_002903_120

Information

Type -
Description -
Location Contig2903: 141984-143924
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30446: 142018-143035 , PASA_asmbl_30448: 143453-143815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002903_120 0.0 - - -
2 Hb_010368_070 0.1163942351 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000173_210 0.1241118039 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
4 Hb_002897_040 0.1352343913 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
5 Hb_000525_040 0.1442616736 - - -
6 Hb_045502_010 0.1532061395 - - prefoldin subunit 1 [Jatropha curcas]
7 Hb_000544_120 0.1533524171 - - PREDICTED: thymidylate kinase [Jatropha curcas]
8 Hb_130177_010 0.1563564186 - - hypothetical protein RCOM_0897890 [Ricinus communis]
9 Hb_000392_280 0.1579681592 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
10 Hb_004659_070 0.1603524694 - - PREDICTED: organ-specific protein P4-like [Vitis vinifera]
11 Hb_004032_460 0.1615049465 - - -
12 Hb_000987_050 0.1616153516 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
13 Hb_003581_110 0.1638240281 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
14 Hb_000173_370 0.1647887356 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
15 Hb_000317_080 0.1660444747 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
16 Hb_031073_010 0.1709864882 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
17 Hb_031862_170 0.1712194647 - - immunophilin, putative [Ricinus communis]
18 Hb_004712_110 0.1717857197 - - 30S ribosomal protein S10, putative [Ricinus communis]
19 Hb_000300_540 0.1752806019 - - PREDICTED: syntaxin-132 [Jatropha curcas]
20 Hb_000018_160 0.1803743389 - - nitrate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_002903_120 Hb_002903_120 Hb_010368_070 Hb_010368_070 Hb_002903_120--Hb_010368_070 Hb_000173_210 Hb_000173_210 Hb_002903_120--Hb_000173_210 Hb_002897_040 Hb_002897_040 Hb_002903_120--Hb_002897_040 Hb_000525_040 Hb_000525_040 Hb_002903_120--Hb_000525_040 Hb_045502_010 Hb_045502_010 Hb_002903_120--Hb_045502_010 Hb_000544_120 Hb_000544_120 Hb_002903_120--Hb_000544_120 Hb_010368_070--Hb_000525_040 Hb_004032_460 Hb_004032_460 Hb_010368_070--Hb_004032_460 Hb_001628_110 Hb_001628_110 Hb_010368_070--Hb_001628_110 Hb_002172_030 Hb_002172_030 Hb_010368_070--Hb_002172_030 Hb_000050_120 Hb_000050_120 Hb_010368_070--Hb_000050_120 Hb_000392_280 Hb_000392_280 Hb_000173_210--Hb_000392_280 Hb_000173_370 Hb_000173_370 Hb_000173_210--Hb_000173_370 Hb_000173_210--Hb_002897_040 Hb_000619_070 Hb_000619_070 Hb_000173_210--Hb_000619_070 Hb_006631_010 Hb_006631_010 Hb_000173_210--Hb_006631_010 Hb_035360_010 Hb_035360_010 Hb_000173_210--Hb_035360_010 Hb_002897_040--Hb_006631_010 Hb_002897_040--Hb_000544_120 Hb_000849_150 Hb_000849_150 Hb_002897_040--Hb_000849_150 Hb_000025_750 Hb_000025_750 Hb_002897_040--Hb_000025_750 Hb_002897_040--Hb_000173_370 Hb_000525_040--Hb_004032_460 Hb_019936_010 Hb_019936_010 Hb_000525_040--Hb_019936_010 Hb_007634_020 Hb_007634_020 Hb_000525_040--Hb_007634_020 Hb_011616_030 Hb_011616_030 Hb_000525_040--Hb_011616_030 Hb_045502_010--Hb_000619_070 Hb_045502_010--Hb_035360_010 Hb_000038_150 Hb_000038_150 Hb_045502_010--Hb_000038_150 Hb_003581_110 Hb_003581_110 Hb_045502_010--Hb_003581_110 Hb_003673_020 Hb_003673_020 Hb_045502_010--Hb_003673_020 Hb_045502_010--Hb_000392_280 Hb_000544_120--Hb_006631_010 Hb_000544_120--Hb_035360_010 Hb_000544_120--Hb_000619_070 Hb_000544_120--Hb_000173_210 Hb_000018_160 Hb_000018_160 Hb_000544_120--Hb_000018_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.042 3.35593 5.33314 0.815293 49.9476 17.4001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.73621 6.11988 4.55895 1.74106 0.467825

CAGE analysis