Hb_002903_140

Information

Type -
Description -
Location Contig2903: 162740-169089
Sequence    

Annotation

kegg
ID rcu:RCOM_0935660
description hypothetical protein
nr
ID XP_012091566.1
description PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
swissprot
ID Q7Z5K2
description Wings apart-like protein homolog OS=Homo sapiens GN=WAPAL PE=1 SV=1
trembl
ID A0A067JLP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21411 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30452: 162051-168881
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002903_140 0.0 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
2 Hb_030545_030 0.0494665715 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
3 Hb_008165_030 0.0613581742 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
4 Hb_000977_300 0.0648654376 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
5 Hb_004319_050 0.0683159172 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
6 Hb_007017_070 0.0684303141 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
7 Hb_096819_010 0.0693618044 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
8 Hb_011249_060 0.0725407104 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
9 Hb_102438_030 0.0755674057 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
10 Hb_000227_310 0.0758392315 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
11 Hb_005288_140 0.0770820496 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
12 Hb_001259_110 0.0777156405 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
13 Hb_000189_630 0.0789894853 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
14 Hb_005403_010 0.0803842559 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
15 Hb_001674_040 0.0803917819 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 23 [Jatropha curcas]
16 Hb_000926_010 0.081135892 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
17 Hb_000529_060 0.0817164727 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
18 Hb_003470_030 0.0818642944 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
19 Hb_003895_020 0.082321199 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
20 Hb_004526_010 0.0836759336 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_002903_140 Hb_002903_140 Hb_030545_030 Hb_030545_030 Hb_002903_140--Hb_030545_030 Hb_008165_030 Hb_008165_030 Hb_002903_140--Hb_008165_030 Hb_000977_300 Hb_000977_300 Hb_002903_140--Hb_000977_300 Hb_004319_050 Hb_004319_050 Hb_002903_140--Hb_004319_050 Hb_007017_070 Hb_007017_070 Hb_002903_140--Hb_007017_070 Hb_096819_010 Hb_096819_010 Hb_002903_140--Hb_096819_010 Hb_102438_030 Hb_102438_030 Hb_030545_030--Hb_102438_030 Hb_000227_310 Hb_000227_310 Hb_030545_030--Hb_000227_310 Hb_030545_030--Hb_007017_070 Hb_030545_030--Hb_008165_030 Hb_030545_030--Hb_096819_010 Hb_001674_040 Hb_001674_040 Hb_008165_030--Hb_001674_040 Hb_010287_030 Hb_010287_030 Hb_008165_030--Hb_010287_030 Hb_008165_030--Hb_096819_010 Hb_004032_230 Hb_004032_230 Hb_008165_030--Hb_004032_230 Hb_004517_020 Hb_004517_020 Hb_000977_300--Hb_004517_020 Hb_000529_060 Hb_000529_060 Hb_000977_300--Hb_000529_060 Hb_000120_910 Hb_000120_910 Hb_000977_300--Hb_000120_910 Hb_001171_030 Hb_001171_030 Hb_000977_300--Hb_001171_030 Hb_000189_630 Hb_000189_630 Hb_000977_300--Hb_000189_630 Hb_000110_350 Hb_000110_350 Hb_000977_300--Hb_000110_350 Hb_005288_140 Hb_005288_140 Hb_004319_050--Hb_005288_140 Hb_004526_010 Hb_004526_010 Hb_004319_050--Hb_004526_010 Hb_000796_120 Hb_000796_120 Hb_004319_050--Hb_000796_120 Hb_152910_010 Hb_152910_010 Hb_004319_050--Hb_152910_010 Hb_011249_060 Hb_011249_060 Hb_004319_050--Hb_011249_060 Hb_004410_070 Hb_004410_070 Hb_007017_070--Hb_004410_070 Hb_007017_070--Hb_000227_310 Hb_000723_110 Hb_000723_110 Hb_007017_070--Hb_000723_110 Hb_007017_070--Hb_102438_030 Hb_000958_150 Hb_000958_150 Hb_096819_010--Hb_000958_150 Hb_011920_020 Hb_011920_020 Hb_096819_010--Hb_011920_020 Hb_002902_020 Hb_002902_020 Hb_096819_010--Hb_002902_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5409 31.3418 22.3061 14.9103 11.4554 12.6876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.87862 4.92973 7.39395 13.3086 10.8626

CAGE analysis