Hb_002904_030

Information

Type -
Description -
Location Contig2904: 16611-21342
Sequence    

Annotation

kegg
ID mdm:103425058
description pentatricopeptide repeat-containing protein At1g71420
nr
ID XP_012076873.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g71420 [Jatropha curcas]
swissprot
ID Q9C9H9
description Pentatricopeptide repeat-containing protein At1g71420 OS=Arabidopsis thaliana GN=PCMP-H70 PE=2 SV=1
trembl
ID M5VWP7
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016573mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002904_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420 [Jatropha curcas]
2 Hb_004129_130 0.0994353936 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_005307_030 0.1044698286 - - hypothetical protein POPTR_0006s04640g [Populus trichocarpa]
4 Hb_001516_100 0.1278040468 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
5 Hb_023827_040 0.1279031667 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
6 Hb_001318_030 0.1322766634 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
7 Hb_001769_010 0.1363137084 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004032_270 0.1380636 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
9 Hb_000009_550 0.138985878 - - hypothetical protein RCOM_0603640 [Ricinus communis]
10 Hb_001274_020 0.139592847 desease resistance Gene Name: ABC_tran ABC transporter GCN1 [Hevea brasiliensis]
11 Hb_001584_170 0.14037576 - - neutral/alkaline invertase [Manihot esculenta]
12 Hb_006573_200 0.1412565018 - - PREDICTED: pentatricopeptide repeat-containing protein At5g52850, chloroplastic [Jatropha curcas]
13 Hb_011161_010 0.141730384 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 isoform X1 [Jatropha curcas]
14 Hb_001141_330 0.141747889 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
15 Hb_000352_090 0.1420485312 - - PREDICTED: syntaxin-22-like isoform X1 [Jatropha curcas]
16 Hb_001610_110 0.1426189383 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
17 Hb_001488_330 0.145042632 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
18 Hb_000977_070 0.1458910093 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
19 Hb_004324_280 0.1463153393 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
20 Hb_004734_060 0.1463222812 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002904_030 Hb_002904_030 Hb_004129_130 Hb_004129_130 Hb_002904_030--Hb_004129_130 Hb_005307_030 Hb_005307_030 Hb_002904_030--Hb_005307_030 Hb_001516_100 Hb_001516_100 Hb_002904_030--Hb_001516_100 Hb_023827_040 Hb_023827_040 Hb_002904_030--Hb_023827_040 Hb_001318_030 Hb_001318_030 Hb_002904_030--Hb_001318_030 Hb_001769_010 Hb_001769_010 Hb_002904_030--Hb_001769_010 Hb_004734_060 Hb_004734_060 Hb_004129_130--Hb_004734_060 Hb_004129_130--Hb_023827_040 Hb_004129_130--Hb_001516_100 Hb_001584_170 Hb_001584_170 Hb_004129_130--Hb_001584_170 Hb_001274_020 Hb_001274_020 Hb_004129_130--Hb_001274_020 Hb_010710_110 Hb_010710_110 Hb_005307_030--Hb_010710_110 Hb_002027_260 Hb_002027_260 Hb_005307_030--Hb_002027_260 Hb_001141_330 Hb_001141_330 Hb_005307_030--Hb_001141_330 Hb_000953_010 Hb_000953_010 Hb_005307_030--Hb_000953_010 Hb_004324_280 Hb_004324_280 Hb_005307_030--Hb_004324_280 Hb_000803_190 Hb_000803_190 Hb_005307_030--Hb_000803_190 Hb_001516_100--Hb_004734_060 Hb_001516_100--Hb_000953_010 Hb_000836_360 Hb_000836_360 Hb_001516_100--Hb_000836_360 Hb_000808_180 Hb_000808_180 Hb_001516_100--Hb_000808_180 Hb_000977_070 Hb_000977_070 Hb_001516_100--Hb_000977_070 Hb_033152_080 Hb_033152_080 Hb_001516_100--Hb_033152_080 Hb_076693_020 Hb_076693_020 Hb_023827_040--Hb_076693_020 Hb_045793_010 Hb_045793_010 Hb_023827_040--Hb_045793_010 Hb_000865_080 Hb_000865_080 Hb_023827_040--Hb_000865_080 Hb_000025_360 Hb_000025_360 Hb_023827_040--Hb_000025_360 Hb_000224_060 Hb_000224_060 Hb_023827_040--Hb_000224_060 Hb_001610_110 Hb_001610_110 Hb_023827_040--Hb_001610_110 Hb_000237_080 Hb_000237_080 Hb_001318_030--Hb_000237_080 Hb_004032_270 Hb_004032_270 Hb_001318_030--Hb_004032_270 Hb_012807_050 Hb_012807_050 Hb_001318_030--Hb_012807_050 Hb_004128_060 Hb_004128_060 Hb_001318_030--Hb_004128_060 Hb_009838_050 Hb_009838_050 Hb_001318_030--Hb_009838_050 Hb_000976_150 Hb_000976_150 Hb_001318_030--Hb_000976_150 Hb_010128_090 Hb_010128_090 Hb_001769_010--Hb_010128_090 Hb_001769_010--Hb_000865_080 Hb_155702_010 Hb_155702_010 Hb_001769_010--Hb_155702_010 Hb_001769_010--Hb_023827_040 Hb_003878_140 Hb_003878_140 Hb_001769_010--Hb_003878_140 Hb_001769_010--Hb_000224_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.275083 0.26621 0.0202765 0.0699194 0.17925 0.313371
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.108714 0.207761 0.163466 0.0387932 0.052087

CAGE analysis