Hb_002904_090

Information

Type -
Description -
Location Contig2904: 53137-59342
Sequence    

Annotation

kegg
ID vvi:100855080
description pentatricopeptide repeat-containing protein At1g71420-like
nr
ID XP_010646434.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g71420-like [Vitis vinifera]
swissprot
ID Q9M9R6
description Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana GN=PCMP-A4 PE=2 SV=2
trembl
ID V4KL60
description Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10011306mg PE=4 SV=1
Gene Ontology
ID GO:0016787
description pentatricopeptide repeat-containing protein at1g71420

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002904_090 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420-like [Vitis vinifera]
2 Hb_019282_010 0.2050988856 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
3 Hb_001427_180 0.2098429337 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
4 Hb_176117_010 0.2106992131 - - Cold-inducible RNA-binding protein [Morus notabilis]
5 Hb_000014_130 0.2114769849 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
6 Hb_000331_500 0.2182316636 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
7 Hb_041237_010 0.2251247171 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002141_020 0.2264219327 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
9 Hb_003859_010 0.2297257024 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
10 Hb_003376_170 0.2338492981 - - PREDICTED: uncharacterized protein LOC105642198 isoform X2 [Jatropha curcas]
11 Hb_125861_010 0.2409940972 - - hypothetical protein RCOM_0703970 [Ricinus communis]
12 Hb_000295_090 0.2487284544 - - Clathrin light chain 2 [Glycine soja]
13 Hb_181320_010 0.2519666812 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
14 Hb_004098_030 0.2531705925 - - TMV resistance protein N, putative [Ricinus communis]
15 Hb_000808_060 0.2536083987 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Jatropha curcas]
16 Hb_000413_170 0.2572172744 - - PREDICTED: probable histone H2A.3 [Jatropha curcas]
17 Hb_002249_110 0.2580368834 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
18 Hb_003398_010 0.2584673169 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
19 Hb_000264_060 0.2586315023 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
20 Hb_071923_010 0.2596996401 - - -

Gene co-expression network

sample Hb_002904_090 Hb_002904_090 Hb_019282_010 Hb_019282_010 Hb_002904_090--Hb_019282_010 Hb_001427_180 Hb_001427_180 Hb_002904_090--Hb_001427_180 Hb_176117_010 Hb_176117_010 Hb_002904_090--Hb_176117_010 Hb_000014_130 Hb_000014_130 Hb_002904_090--Hb_000014_130 Hb_000331_500 Hb_000331_500 Hb_002904_090--Hb_000331_500 Hb_041237_010 Hb_041237_010 Hb_002904_090--Hb_041237_010 Hb_058381_010 Hb_058381_010 Hb_019282_010--Hb_058381_010 Hb_000200_040 Hb_000200_040 Hb_019282_010--Hb_000200_040 Hb_012807_080 Hb_012807_080 Hb_019282_010--Hb_012807_080 Hb_002411_130 Hb_002411_130 Hb_019282_010--Hb_002411_130 Hb_000159_110 Hb_000159_110 Hb_019282_010--Hb_000159_110 Hb_003376_070 Hb_003376_070 Hb_019282_010--Hb_003376_070 Hb_001513_020 Hb_001513_020 Hb_001427_180--Hb_001513_020 Hb_000352_130 Hb_000352_130 Hb_001427_180--Hb_000352_130 Hb_001427_180--Hb_019282_010 Hb_001427_180--Hb_176117_010 Hb_005016_150 Hb_005016_150 Hb_001427_180--Hb_005016_150 Hb_181320_010 Hb_181320_010 Hb_176117_010--Hb_181320_010 Hb_176117_010--Hb_005016_150 Hb_000270_500 Hb_000270_500 Hb_176117_010--Hb_000270_500 Hb_144898_010 Hb_144898_010 Hb_176117_010--Hb_144898_010 Hb_176117_010--Hb_000200_040 Hb_183980_010 Hb_183980_010 Hb_176117_010--Hb_183980_010 Hb_000014_130--Hb_041237_010 Hb_007978_020 Hb_007978_020 Hb_000014_130--Hb_007978_020 Hb_003772_020 Hb_003772_020 Hb_000014_130--Hb_003772_020 Hb_032018_010 Hb_032018_010 Hb_000014_130--Hb_032018_010 Hb_003398_010 Hb_003398_010 Hb_000014_130--Hb_003398_010 Hb_002141_020 Hb_002141_020 Hb_000331_500--Hb_002141_020 Hb_136765_010 Hb_136765_010 Hb_000331_500--Hb_136765_010 Hb_000107_140 Hb_000107_140 Hb_000331_500--Hb_000107_140 Hb_003376_170 Hb_003376_170 Hb_000331_500--Hb_003376_170 Hb_004662_010 Hb_004662_010 Hb_000331_500--Hb_004662_010 Hb_042404_010 Hb_042404_010 Hb_000331_500--Hb_042404_010 Hb_041237_010--Hb_003398_010 Hb_000617_040 Hb_000617_040 Hb_041237_010--Hb_000617_040 Hb_000413_170 Hb_000413_170 Hb_041237_010--Hb_000413_170 Hb_041237_010--Hb_007978_020 Hb_003299_080 Hb_003299_080 Hb_041237_010--Hb_003299_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.258419 0.253201 0.0264457 0.0240816 0.359344 0.834385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109931 0.222444 0 0 0

CAGE analysis