Hb_002908_040

Information

Type -
Description -
Location Contig2908: 42870-44814
Sequence    

Annotation

kegg
ID rcu:RCOM_0720330
description DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative (EC:5.99.1.3)
nr
ID XP_002526325.1
description DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
swissprot
ID P34030
description DNA gyrase subunit A (Fragment) OS=Spiroplasma citri GN=gyrA PE=3 SV=1
trembl
ID B9SK06
description DNA gyrase subunit A, chloroplast/mitochondrial, putative OS=Ricinus communis GN=RCOM_0720330 PE=4 SV=1
Gene Ontology
ID GO:0005694
description dna gyrase subunit chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30456: 42943-62911
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002908_040 0.0 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
2 Hb_001223_010 0.0706777597 - - PREDICTED: FGGY carbohydrate kinase domain-containing protein isoform X2 [Jatropha curcas]
3 Hb_007472_090 0.0794580934 - - unnamed protein product [Coffea canephora]
4 Hb_002639_110 0.0823849818 - - hypothetical protein L484_011673 [Morus notabilis]
5 Hb_004306_120 0.0942529384 - - DNA binding protein, putative [Ricinus communis]
6 Hb_002805_210 0.0954268676 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
7 Hb_001691_200 0.0989436737 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
8 Hb_097185_010 0.1005964356 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
9 Hb_001726_100 0.1008040164 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
10 Hb_011485_060 0.103730458 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
11 Hb_012022_060 0.1046029126 - - PREDICTED: uncharacterized protein LOC105646588 isoform X2 [Jatropha curcas]
12 Hb_004208_050 0.1052093905 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
13 Hb_000363_300 0.1062662083 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
14 Hb_001999_140 0.1070345421 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_002609_080 0.1072985364 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
16 Hb_007120_060 0.1120991867 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
17 Hb_000009_410 0.1122596788 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
18 Hb_000934_210 0.1124112073 - - suppressor of ty, putative [Ricinus communis]
19 Hb_012244_020 0.1127061913 - - calpain, putative [Ricinus communis]
20 Hb_188281_040 0.1134775951 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]

Gene co-expression network

sample Hb_002908_040 Hb_002908_040 Hb_001223_010 Hb_001223_010 Hb_002908_040--Hb_001223_010 Hb_007472_090 Hb_007472_090 Hb_002908_040--Hb_007472_090 Hb_002639_110 Hb_002639_110 Hb_002908_040--Hb_002639_110 Hb_004306_120 Hb_004306_120 Hb_002908_040--Hb_004306_120 Hb_002805_210 Hb_002805_210 Hb_002908_040--Hb_002805_210 Hb_001691_200 Hb_001691_200 Hb_002908_040--Hb_001691_200 Hb_000589_380 Hb_000589_380 Hb_001223_010--Hb_000589_380 Hb_001223_010--Hb_007472_090 Hb_001223_010--Hb_002639_110 Hb_011485_060 Hb_011485_060 Hb_001223_010--Hb_011485_060 Hb_001726_100 Hb_001726_100 Hb_001223_010--Hb_001726_100 Hb_004208_050 Hb_004208_050 Hb_007472_090--Hb_004208_050 Hb_000922_030 Hb_000922_030 Hb_007472_090--Hb_000922_030 Hb_007472_090--Hb_002639_110 Hb_000358_050 Hb_000358_050 Hb_007472_090--Hb_000358_050 Hb_007441_160 Hb_007441_160 Hb_007472_090--Hb_007441_160 Hb_002639_110--Hb_011485_060 Hb_000365_240 Hb_000365_240 Hb_002639_110--Hb_000365_240 Hb_002609_080 Hb_002609_080 Hb_002639_110--Hb_002609_080 Hb_004306_120--Hb_002609_080 Hb_011021_050 Hb_011021_050 Hb_004306_120--Hb_011021_050 Hb_003849_280 Hb_003849_280 Hb_004306_120--Hb_003849_280 Hb_000363_300 Hb_000363_300 Hb_004306_120--Hb_000363_300 Hb_005408_030 Hb_005408_030 Hb_004306_120--Hb_005408_030 Hb_001648_020 Hb_001648_020 Hb_004306_120--Hb_001648_020 Hb_011174_020 Hb_011174_020 Hb_002805_210--Hb_011174_020 Hb_027472_220 Hb_027472_220 Hb_002805_210--Hb_027472_220 Hb_012244_020 Hb_012244_020 Hb_002805_210--Hb_012244_020 Hb_000934_210 Hb_000934_210 Hb_002805_210--Hb_000934_210 Hb_001157_160 Hb_001157_160 Hb_002805_210--Hb_001157_160 Hb_123531_010 Hb_123531_010 Hb_002805_210--Hb_123531_010 Hb_002631_210 Hb_002631_210 Hb_001691_200--Hb_002631_210 Hb_001691_200--Hb_004208_050 Hb_011883_020 Hb_011883_020 Hb_001691_200--Hb_011883_020 Hb_001691_200--Hb_002609_080 Hb_005181_050 Hb_005181_050 Hb_001691_200--Hb_005181_050 Hb_000270_170 Hb_000270_170 Hb_001691_200--Hb_000270_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.62947 6.68459 4.54781 2.83634 4.00419 3.38148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.46879 3.38083 3.57944 9.92979 10.7877

CAGE analysis