Hb_002908_050

Information

Type -
Description -
Location Contig2908: 55981-70352
Sequence    

Annotation

kegg
ID phd:102330572
description probable DNA gyrase subunit A, chloroplastic/mitochondrial-like
nr
ID KDO41392.1
description hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
swissprot
ID P48372
description DNA gyrase subunit A OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=gyrA PE=3 SV=1
trembl
ID A0A067DQT4
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0022902mg PE=4 SV=1
Gene Ontology
ID GO:0043229
description dna gyrase subunit chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30456: 42943-62911 , PASA_asmbl_30459: 62914-110837
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002908_050 0.0 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
2 Hb_001876_010 0.0517136712 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
3 Hb_000189_550 0.0599598654 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
4 Hb_000984_170 0.0608418564 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
5 Hb_000011_060 0.0627494977 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
6 Hb_000363_040 0.0657562486 - - Protein transport protein Sec24A, putative [Ricinus communis]
7 Hb_004480_100 0.0688686504 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
8 Hb_016347_010 0.0719112718 - - protein transporter, putative [Ricinus communis]
9 Hb_000614_240 0.0726978168 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
10 Hb_001105_020 0.0728264455 - - expressed protein, putative [Ricinus communis]
11 Hb_000028_390 0.0740880689 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
12 Hb_001440_030 0.0745129144 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
13 Hb_002768_060 0.075739368 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
14 Hb_004677_050 0.0763602589 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
15 Hb_009296_040 0.0780961813 - - hypothetical protein L484_007435 [Morus notabilis]
16 Hb_000352_340 0.0791034777 - - PREDICTED: importin-13 [Jatropha curcas]
17 Hb_000358_050 0.0795424476 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
18 Hb_000069_210 0.0802536017 - - PREDICTED: exportin-2 [Jatropha curcas]
19 Hb_000976_100 0.0842199408 - - eukaryotic translation elongation factor, putative [Ricinus communis]
20 Hb_001999_310 0.0846770293 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]

Gene co-expression network

sample Hb_002908_050 Hb_002908_050 Hb_001876_010 Hb_001876_010 Hb_002908_050--Hb_001876_010 Hb_000189_550 Hb_000189_550 Hb_002908_050--Hb_000189_550 Hb_000984_170 Hb_000984_170 Hb_002908_050--Hb_000984_170 Hb_000011_060 Hb_000011_060 Hb_002908_050--Hb_000011_060 Hb_000363_040 Hb_000363_040 Hb_002908_050--Hb_000363_040 Hb_004480_100 Hb_004480_100 Hb_002908_050--Hb_004480_100 Hb_001876_010--Hb_000011_060 Hb_001876_010--Hb_000189_550 Hb_000069_210 Hb_000069_210 Hb_001876_010--Hb_000069_210 Hb_000028_390 Hb_000028_390 Hb_001876_010--Hb_000028_390 Hb_001876_010--Hb_000984_170 Hb_001105_020 Hb_001105_020 Hb_000189_550--Hb_001105_020 Hb_000189_550--Hb_000011_060 Hb_000352_310 Hb_000352_310 Hb_000189_550--Hb_000352_310 Hb_000656_010 Hb_000656_010 Hb_000189_550--Hb_000656_010 Hb_004677_050 Hb_004677_050 Hb_000984_170--Hb_004677_050 Hb_004030_080 Hb_004030_080 Hb_000984_170--Hb_004030_080 Hb_005663_110 Hb_005663_110 Hb_000984_170--Hb_005663_110 Hb_006452_120 Hb_006452_120 Hb_000984_170--Hb_006452_120 Hb_000984_170--Hb_000011_060 Hb_013726_090 Hb_013726_090 Hb_000011_060--Hb_013726_090 Hb_000614_240 Hb_000614_240 Hb_000011_060--Hb_000614_240 Hb_010142_020 Hb_010142_020 Hb_000011_060--Hb_010142_020 Hb_000011_060--Hb_001105_020 Hb_016347_010 Hb_016347_010 Hb_000363_040--Hb_016347_010 Hb_005305_050 Hb_005305_050 Hb_000363_040--Hb_005305_050 Hb_000363_040--Hb_004677_050 Hb_000109_180 Hb_000109_180 Hb_000363_040--Hb_000109_180 Hb_000976_100 Hb_000976_100 Hb_000363_040--Hb_000976_100 Hb_002768_060 Hb_002768_060 Hb_004480_100--Hb_002768_060 Hb_000789_200 Hb_000789_200 Hb_004480_100--Hb_000789_200 Hb_001789_150 Hb_001789_150 Hb_004480_100--Hb_001789_150 Hb_004480_100--Hb_001876_010 Hb_001951_220 Hb_001951_220 Hb_004480_100--Hb_001951_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.13821 1.73693 1.10848 2.47897 1.4466 1.63737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.73958 1.31909 2.22155 3.59154 2.86115

CAGE analysis