Hb_002909_050

Information

Type -
Description -
Location Contig2909: 20167-24851
Sequence    

Annotation

kegg
ID rcu:RCOM_1271010
description hypothetical protein
nr
ID XP_002523666.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SCE7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1271010 PE=4 SV=1
Gene Ontology
ID GO:0009220
description hydroxyproline-rich glycoprotein family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30466: 20953-24757 , PASA_asmbl_30467: 20027-24911 , PASA_asmbl_30468: 20027-24911
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002909_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000076_130 0.0703132221 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
3 Hb_010710_080 0.0747962967 - - -
4 Hb_000665_160 0.0772309952 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Jatropha curcas]
5 Hb_000544_010 0.0772496464 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
6 Hb_001599_030 0.0775106448 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
7 Hb_006915_070 0.0838422592 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
8 Hb_003794_010 0.0850602529 - - PREDICTED: uncharacterized protein LOC105641013 [Jatropha curcas]
9 Hb_048476_180 0.0854391361 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
10 Hb_007307_020 0.0858451355 - - DNA binding protein, putative [Ricinus communis]
11 Hb_000160_210 0.086690283 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006449_050 0.087295094 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
13 Hb_000574_440 0.0886256777 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
14 Hb_008024_030 0.0888113589 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
15 Hb_003052_150 0.0889469281 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
16 Hb_000041_280 0.0890206129 - - PREDICTED: probable protein arginine N-methyltransferase 6 [Jatropha curcas]
17 Hb_010710_070 0.089819605 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
18 Hb_010381_060 0.0903534405 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
19 Hb_000010_180 0.090388389 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
20 Hb_001623_480 0.0904198813 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]

Gene co-expression network

sample Hb_002909_050 Hb_002909_050 Hb_000076_130 Hb_000076_130 Hb_002909_050--Hb_000076_130 Hb_010710_080 Hb_010710_080 Hb_002909_050--Hb_010710_080 Hb_000665_160 Hb_000665_160 Hb_002909_050--Hb_000665_160 Hb_000544_010 Hb_000544_010 Hb_002909_050--Hb_000544_010 Hb_001599_030 Hb_001599_030 Hb_002909_050--Hb_001599_030 Hb_006915_070 Hb_006915_070 Hb_002909_050--Hb_006915_070 Hb_000076_130--Hb_000665_160 Hb_000076_130--Hb_000544_010 Hb_004994_380 Hb_004994_380 Hb_000076_130--Hb_004994_380 Hb_004963_030 Hb_004963_030 Hb_000076_130--Hb_004963_030 Hb_001141_020 Hb_001141_020 Hb_000076_130--Hb_001141_020 Hb_000041_280 Hb_000041_280 Hb_010710_080--Hb_000041_280 Hb_001136_090 Hb_001136_090 Hb_010710_080--Hb_001136_090 Hb_001623_480 Hb_001623_480 Hb_010710_080--Hb_001623_480 Hb_011512_060 Hb_011512_060 Hb_010710_080--Hb_011512_060 Hb_000574_440 Hb_000574_440 Hb_010710_080--Hb_000574_440 Hb_000665_160--Hb_000544_010 Hb_000107_400 Hb_000107_400 Hb_000665_160--Hb_000107_400 Hb_007007_060 Hb_007007_060 Hb_000665_160--Hb_007007_060 Hb_002893_070 Hb_002893_070 Hb_000665_160--Hb_002893_070 Hb_034432_030 Hb_034432_030 Hb_000544_010--Hb_034432_030 Hb_006445_010 Hb_006445_010 Hb_000544_010--Hb_006445_010 Hb_001379_110 Hb_001379_110 Hb_000544_010--Hb_001379_110 Hb_002749_110 Hb_002749_110 Hb_000544_010--Hb_002749_110 Hb_001235_200 Hb_001235_200 Hb_001599_030--Hb_001235_200 Hb_000320_200 Hb_000320_200 Hb_001599_030--Hb_000320_200 Hb_003544_100 Hb_003544_100 Hb_001599_030--Hb_003544_100 Hb_010381_060 Hb_010381_060 Hb_001599_030--Hb_010381_060 Hb_001599_030--Hb_002749_110 Hb_009411_010 Hb_009411_010 Hb_001599_030--Hb_009411_010 Hb_000034_040 Hb_000034_040 Hb_006915_070--Hb_000034_040 Hb_002681_070 Hb_002681_070 Hb_006915_070--Hb_002681_070 Hb_000345_170 Hb_000345_170 Hb_006915_070--Hb_000345_170 Hb_000116_180 Hb_000116_180 Hb_006915_070--Hb_000116_180 Hb_008785_040 Hb_008785_040 Hb_006915_070--Hb_008785_040 Hb_000856_110 Hb_000856_110 Hb_006915_070--Hb_000856_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.9064 17.6689 19.526 11.9072 39.6053 35.8264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.2385 14.4891 24.5378 25.3532 32.3937

CAGE analysis