Hb_002909_060

Information

Type -
Description -
Location Contig2909: 25506-26174
Sequence    

Annotation

kegg
ID rcu:RCOM_0582440
description 3-5 exonuclease, putative
nr
ID XP_002527682.1
description 3-5 exonuclease, putative [Ricinus communis]
swissprot
ID Q84LH3
description Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX PE=1 SV=1
trembl
ID B9SNW3
description 3-5 exonuclease, putative OS=Ricinus communis GN=RCOM_0582440 PE=4 SV=1
Gene Ontology
ID GO:0003676
description werner syndrome-like exonuclease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30470: 25047-26199
cDNA
(Sanger)
(ID:Location)		 006_C11.ab1: 25449-26123 , 027_J13.ab1: 25589-25981 , 032_A16.ab1: 25533-26223 , 032_F15.ab1: 25546-26267 , 032_M12.ab1: 25756-25978 , 033_B15.ab1: 25440-26219 , 048_P02.ab1: 25443-26220

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002909_060 0.0 - - 3-5 exonuclease, putative [Ricinus communis]
2 Hb_002759_230 0.0972895746 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
3 Hb_002027_400 0.111346459 - - PREDICTED: auxin response factor 23-like [Jatropha curcas]
4 Hb_002540_030 0.1137339586 - - hypothetical protein 32 [Hevea brasiliensis]
5 Hb_002053_060 0.1144037429 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
6 Hb_001912_010 0.1186495699 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
7 Hb_010172_070 0.1251637483 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
8 Hb_000905_200 0.1253754126 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
9 Hb_007666_020 0.1256609735 - - alkaline phytoceramidase, putative [Ricinus communis]
10 Hb_000188_130 0.1266167565 - - PREDICTED: uncharacterized protein LOC102628744 [Citrus sinensis]
11 Hb_054127_040 0.1334294501 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
12 Hb_001329_210 0.141968735 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
13 Hb_029866_060 0.1420158855 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
14 Hb_007382_150 0.1421329726 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
15 Hb_000165_010 0.1427918981 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
16 Hb_000922_270 0.142858277 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
17 Hb_000012_130 0.1430000694 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
18 Hb_003893_090 0.1455555867 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
19 Hb_174865_030 0.1494554484 - - PREDICTED: hemiasterlin resistant protein 1 [Eucalyptus grandis]
20 Hb_007140_020 0.1494771865 - - hypothetical protein CICLE_v10008419mg [Citrus clementina]

Gene co-expression network

sample Hb_002909_060 Hb_002909_060 Hb_002759_230 Hb_002759_230 Hb_002909_060--Hb_002759_230 Hb_002027_400 Hb_002027_400 Hb_002909_060--Hb_002027_400 Hb_002540_030 Hb_002540_030 Hb_002909_060--Hb_002540_030 Hb_002053_060 Hb_002053_060 Hb_002909_060--Hb_002053_060 Hb_001912_010 Hb_001912_010 Hb_002909_060--Hb_001912_010 Hb_010172_070 Hb_010172_070 Hb_002909_060--Hb_010172_070 Hb_000188_130 Hb_000188_130 Hb_002759_230--Hb_000188_130 Hb_000212_260 Hb_000212_260 Hb_002759_230--Hb_000212_260 Hb_000099_060 Hb_000099_060 Hb_002759_230--Hb_000099_060 Hb_002759_230--Hb_001912_010 Hb_003581_090 Hb_003581_090 Hb_002759_230--Hb_003581_090 Hb_000012_130 Hb_000012_130 Hb_002027_400--Hb_000012_130 Hb_001160_030 Hb_001160_030 Hb_002027_400--Hb_001160_030 Hb_002027_400--Hb_002759_230 Hb_001439_170 Hb_001439_170 Hb_002027_400--Hb_001439_170 Hb_028487_030 Hb_028487_030 Hb_002027_400--Hb_028487_030 Hb_014720_080 Hb_014720_080 Hb_002540_030--Hb_014720_080 Hb_002540_030--Hb_010172_070 Hb_000922_270 Hb_000922_270 Hb_002540_030--Hb_000922_270 Hb_007666_020 Hb_007666_020 Hb_002540_030--Hb_007666_020 Hb_003893_090 Hb_003893_090 Hb_002540_030--Hb_003893_090 Hb_001538_100 Hb_001538_100 Hb_002540_030--Hb_001538_100 Hb_016604_020 Hb_016604_020 Hb_002053_060--Hb_016604_020 Hb_002053_060--Hb_002759_230 Hb_003106_050 Hb_003106_050 Hb_002053_060--Hb_003106_050 Hb_002053_060--Hb_000099_060 Hb_002182_060 Hb_002182_060 Hb_002053_060--Hb_002182_060 Hb_001912_010--Hb_000212_260 Hb_007479_020 Hb_007479_020 Hb_001912_010--Hb_007479_020 Hb_001912_010--Hb_010172_070 Hb_006573_220 Hb_006573_220 Hb_001912_010--Hb_006573_220 Hb_000329_330 Hb_000329_330 Hb_001912_010--Hb_000329_330 Hb_003376_030 Hb_003376_030 Hb_001912_010--Hb_003376_030 Hb_010172_070--Hb_007479_020 Hb_001722_100 Hb_001722_100 Hb_010172_070--Hb_001722_100 Hb_010172_070--Hb_014720_080 Hb_010172_070--Hb_000922_270 Hb_001257_080 Hb_001257_080 Hb_010172_070--Hb_001257_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
499.834 275.333 121.525 156.697 331.09 176.119
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1113.6 1009.5 793.9 107.575 32.7834

CAGE analysis