Hb_002909_070

Information

Type -
Description -
Location Contig2909: 27692-28045
Sequence    

Annotation

kegg
ID pop:POPTR_0006s03000g
description POPTRDRAFT_560318; hypothetical protein
nr
ID XP_002307948.1
description hypothetical protein POPTR_0006s03000g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HDT2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s03000g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002909_070 0.0 - - hypothetical protein POPTR_0006s03000g [Populus trichocarpa]
2 Hb_000030_150 0.083608309 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
3 Hb_003893_090 0.0862612595 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
4 Hb_000905_200 0.0921804594 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
5 Hb_003106_050 0.0939218746 transcription factor TF Family: Orphans hypothetical protein POPTR_0015s08130g [Populus trichocarpa]
6 Hb_002182_060 0.098072028 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
7 Hb_002301_140 0.1043454821 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
8 Hb_005431_010 0.1061969987 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
9 Hb_061802_020 0.1068305521 - - zinc finger family protein [Populus trichocarpa]
10 Hb_006949_040 0.1111142858 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_029866_060 0.1121754303 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
12 Hb_014720_080 0.1132129743 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
13 Hb_002798_050 0.1143828945 - - l-allo-threonine aldolase, putative [Ricinus communis]
14 Hb_000635_180 0.1164547807 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
15 Hb_000503_050 0.11649138 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Gossypium raimondii]
16 Hb_000111_330 0.1190389863 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
17 Hb_000025_120 0.1196034079 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
18 Hb_002284_010 0.1214011257 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008173_090 0.1215285082 - - glutathione peroxidase, putative [Ricinus communis]
20 Hb_002411_200 0.1220622464 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002909_070 Hb_002909_070 Hb_000030_150 Hb_000030_150 Hb_002909_070--Hb_000030_150 Hb_003893_090 Hb_003893_090 Hb_002909_070--Hb_003893_090 Hb_000905_200 Hb_000905_200 Hb_002909_070--Hb_000905_200 Hb_003106_050 Hb_003106_050 Hb_002909_070--Hb_003106_050 Hb_002182_060 Hb_002182_060 Hb_002909_070--Hb_002182_060 Hb_002301_140 Hb_002301_140 Hb_002909_070--Hb_002301_140 Hb_061802_020 Hb_061802_020 Hb_000030_150--Hb_061802_020 Hb_006949_040 Hb_006949_040 Hb_000030_150--Hb_006949_040 Hb_003787_020 Hb_003787_020 Hb_000030_150--Hb_003787_020 Hb_000920_240 Hb_000920_240 Hb_000030_150--Hb_000920_240 Hb_002890_280 Hb_002890_280 Hb_000030_150--Hb_002890_280 Hb_014720_080 Hb_014720_080 Hb_003893_090--Hb_014720_080 Hb_002540_030 Hb_002540_030 Hb_003893_090--Hb_002540_030 Hb_003125_150 Hb_003125_150 Hb_003893_090--Hb_003125_150 Hb_000815_260 Hb_000815_260 Hb_003893_090--Hb_000815_260 Hb_003893_090--Hb_002182_060 Hb_005431_010 Hb_005431_010 Hb_000905_200--Hb_005431_010 Hb_001912_010 Hb_001912_010 Hb_000905_200--Hb_001912_010 Hb_000347_410 Hb_000347_410 Hb_000905_200--Hb_000347_410 Hb_029866_060 Hb_029866_060 Hb_000905_200--Hb_029866_060 Hb_007926_060 Hb_007926_060 Hb_000905_200--Hb_007926_060 Hb_003106_050--Hb_002182_060 Hb_008173_090 Hb_008173_090 Hb_003106_050--Hb_008173_090 Hb_003106_050--Hb_014720_080 Hb_003106_050--Hb_029866_060 Hb_000111_330 Hb_000111_330 Hb_003106_050--Hb_000111_330 Hb_000503_050 Hb_000503_050 Hb_003106_050--Hb_000503_050 Hb_002182_060--Hb_008173_090 Hb_000099_060 Hb_000099_060 Hb_002182_060--Hb_000099_060 Hb_000970_010 Hb_000970_010 Hb_002182_060--Hb_000970_010 Hb_000200_100 Hb_000200_100 Hb_002182_060--Hb_000200_100 Hb_002182_060--Hb_002301_140 Hb_028995_040 Hb_028995_040 Hb_002301_140--Hb_028995_040 Hb_002301_140--Hb_000200_100 Hb_023226_040 Hb_023226_040 Hb_002301_140--Hb_023226_040 Hb_002007_060 Hb_002007_060 Hb_002301_140--Hb_002007_060 Hb_009773_020 Hb_009773_020 Hb_002301_140--Hb_009773_020 Hb_001235_190 Hb_001235_190 Hb_002301_140--Hb_001235_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.485 38.192 10.8474 31.6839 21.5151 45.8894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
86.2307 90.2178 69.7879 15.6782 8.40808

CAGE analysis