Hb_002909_080

Information

Type -
Description -
Location Contig2909: 29604-31334
Sequence    

Annotation

kegg
ID rcu:RCOM_1271130
description inositol or phosphatidylinositol kinase, putative
nr
ID XP_002523668.1
description inositol or phosphatidylinositol kinase, putative [Ricinus communis]
swissprot
ID O22199
description Phosphatidylinositol 4-kinase gamma 1 OS=Arabidopsis thaliana GN=PI4KG1 PE=2 SV=1
trembl
ID B9SCE9
description Inositol or phosphatidylinositol kinase, putative OS=Ricinus communis GN=RCOM_1271130 PE=4 SV=1
Gene Ontology
ID GO:0016301
description phosphatidylinositol 4-kinase gamma 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30471: 29404-32213 , PASA_asmbl_30472: 30932-32069
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002909_080 0.0 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
2 Hb_000979_260 0.1505914583 - - ARF GTPase activator, putative [Ricinus communis]
3 Hb_029584_160 0.1533995125 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
4 Hb_008066_080 0.1656856839 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
5 Hb_112064_010 0.1747734168 - - PREDICTED: inositol-phosphate phosphatase [Jatropha curcas]
6 Hb_008747_010 0.1748768029 - - PREDICTED: protein argonaute 2-like isoform X1 [Jatropha curcas]
7 Hb_001353_020 0.1751061547 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000254_010 0.1784317076 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Jatropha curcas]
9 Hb_004724_170 0.1825465672 - - PREDICTED: rho GTPase-activating protein 1 [Jatropha curcas]
10 Hb_011242_010 0.186267418 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Jatropha curcas]
11 Hb_002571_080 0.1867656668 - - secondary cell wall-related glycosyltransferase family 14 [Populus tremula x Populus tremuloides]
12 Hb_001754_120 0.187619233 - - PREDICTED: probable protein phosphatase 2C 40 [Jatropha curcas]
13 Hb_021576_120 0.1900586916 - - DNA-directed RNA polymerase subunit, putative [Ricinus communis]
14 Hb_001247_150 0.1923678839 - - hypothetical protein JCGZ_23179 [Jatropha curcas]
15 Hb_002928_020 0.193596653 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
16 Hb_031385_010 0.1951150792 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
17 Hb_001179_010 0.1999286683 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
18 Hb_113119_010 0.2022585035 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000340_220 0.2030946917 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007237_010 0.2033229113 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002909_080 Hb_002909_080 Hb_000979_260 Hb_000979_260 Hb_002909_080--Hb_000979_260 Hb_029584_160 Hb_029584_160 Hb_002909_080--Hb_029584_160 Hb_008066_080 Hb_008066_080 Hb_002909_080--Hb_008066_080 Hb_112064_010 Hb_112064_010 Hb_002909_080--Hb_112064_010 Hb_008747_010 Hb_008747_010 Hb_002909_080--Hb_008747_010 Hb_001353_020 Hb_001353_020 Hb_002909_080--Hb_001353_020 Hb_003226_200 Hb_003226_200 Hb_000979_260--Hb_003226_200 Hb_001754_120 Hb_001754_120 Hb_000979_260--Hb_001754_120 Hb_033152_110 Hb_033152_110 Hb_000979_260--Hb_033152_110 Hb_004724_170 Hb_004724_170 Hb_000979_260--Hb_004724_170 Hb_011242_010 Hb_011242_010 Hb_000979_260--Hb_011242_010 Hb_000622_060 Hb_000622_060 Hb_000979_260--Hb_000622_060 Hb_026698_020 Hb_026698_020 Hb_029584_160--Hb_026698_020 Hb_001179_010 Hb_001179_010 Hb_029584_160--Hb_001179_010 Hb_000035_060 Hb_000035_060 Hb_029584_160--Hb_000035_060 Hb_000635_050 Hb_000635_050 Hb_029584_160--Hb_000635_050 Hb_000096_110 Hb_000096_110 Hb_029584_160--Hb_000096_110 Hb_005999_020 Hb_005999_020 Hb_029584_160--Hb_005999_020 Hb_001189_100 Hb_001189_100 Hb_008066_080--Hb_001189_100 Hb_001439_010 Hb_001439_010 Hb_008066_080--Hb_001439_010 Hb_000692_110 Hb_000692_110 Hb_008066_080--Hb_000692_110 Hb_003879_020 Hb_003879_020 Hb_008066_080--Hb_003879_020 Hb_006469_090 Hb_006469_090 Hb_008066_080--Hb_006469_090 Hb_003607_140 Hb_003607_140 Hb_008066_080--Hb_003607_140 Hb_003050_360 Hb_003050_360 Hb_112064_010--Hb_003050_360 Hb_001360_030 Hb_001360_030 Hb_112064_010--Hb_001360_030 Hb_112064_010--Hb_000635_050 Hb_002942_140 Hb_002942_140 Hb_112064_010--Hb_002942_140 Hb_034579_020 Hb_034579_020 Hb_112064_010--Hb_034579_020 Hb_000115_360 Hb_000115_360 Hb_112064_010--Hb_000115_360 Hb_012423_060 Hb_012423_060 Hb_008747_010--Hb_012423_060 Hb_000186_030 Hb_000186_030 Hb_008747_010--Hb_000186_030 Hb_000753_110 Hb_000753_110 Hb_008747_010--Hb_000753_110 Hb_003299_020 Hb_003299_020 Hb_008747_010--Hb_003299_020 Hb_005545_020 Hb_005545_020 Hb_008747_010--Hb_005545_020 Hb_005622_020 Hb_005622_020 Hb_008747_010--Hb_005622_020 Hb_001353_020--Hb_000096_110 Hb_003929_230 Hb_003929_230 Hb_001353_020--Hb_003929_230 Hb_007894_070 Hb_007894_070 Hb_001353_020--Hb_007894_070 Hb_002000_090 Hb_002000_090 Hb_001353_020--Hb_002000_090 Hb_001353_020--Hb_008066_080 Hb_006414_010 Hb_006414_010 Hb_001353_020--Hb_006414_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.011659 2.59054 5.10153 4.51231 0.0116783 0.426811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0530522 0.0208703 2.20689 3.06847 5.66337

CAGE analysis