Hb_002909_100

Information

Type -
Description -
Location Contig2909: 51370-55288
Sequence    

Annotation

kegg
ID tcc:TCM_023779
description Zinc finger family protein, putative isoform 1
nr
ID XP_012089846.1
description PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JFU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01985 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30475: 51215-52412 , PASA_asmbl_30476: 52415-65445
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002909_100 0.0 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
2 Hb_000230_470 0.0844250237 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
3 Hb_000196_010 0.0875529507 - - Patellin-5, putative [Ricinus communis]
4 Hb_003912_080 0.0886062837 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
5 Hb_009745_010 0.0936738615 - - cellulose synthase-like protein [Populus tomentosa]
6 Hb_005408_100 0.0977469555 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
7 Hb_000753_120 0.1080138512 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
8 Hb_009078_020 0.1168370115 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
9 Hb_001408_020 0.1189167324 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
10 Hb_002259_220 0.1220088463 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
11 Hb_001059_060 0.1220298087 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
12 Hb_003849_160 0.1220527696 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
13 Hb_000473_120 0.1225240401 - - hypothetical protein JCGZ_16177 [Jatropha curcas]
14 Hb_001999_320 0.1243802966 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
15 Hb_004678_010 0.1254823608 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
16 Hb_000853_330 0.1254901224 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
17 Hb_011828_010 0.1261147836 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
18 Hb_000363_180 0.1266171844 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
19 Hb_006949_060 0.1268323974 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
20 Hb_000950_040 0.1274019458 - - cation-transporting atpase plant, putative [Ricinus communis]

Gene co-expression network

sample Hb_002909_100 Hb_002909_100 Hb_000230_470 Hb_000230_470 Hb_002909_100--Hb_000230_470 Hb_000196_010 Hb_000196_010 Hb_002909_100--Hb_000196_010 Hb_003912_080 Hb_003912_080 Hb_002909_100--Hb_003912_080 Hb_009745_010 Hb_009745_010 Hb_002909_100--Hb_009745_010 Hb_005408_100 Hb_005408_100 Hb_002909_100--Hb_005408_100 Hb_000753_120 Hb_000753_120 Hb_002909_100--Hb_000753_120 Hb_000230_470--Hb_005408_100 Hb_000230_470--Hb_000753_120 Hb_000230_470--Hb_003912_080 Hb_000320_270 Hb_000320_270 Hb_000230_470--Hb_000320_270 Hb_002686_210 Hb_002686_210 Hb_000230_470--Hb_002686_210 Hb_000196_010--Hb_009745_010 Hb_000363_180 Hb_000363_180 Hb_000196_010--Hb_000363_180 Hb_000950_040 Hb_000950_040 Hb_000196_010--Hb_000950_040 Hb_000732_230 Hb_000732_230 Hb_000196_010--Hb_000732_230 Hb_052117_010 Hb_052117_010 Hb_000196_010--Hb_052117_010 Hb_001999_320 Hb_001999_320 Hb_003912_080--Hb_001999_320 Hb_004678_010 Hb_004678_010 Hb_003912_080--Hb_004678_010 Hb_001948_090 Hb_001948_090 Hb_003912_080--Hb_001948_090 Hb_002026_030 Hb_002026_030 Hb_003912_080--Hb_002026_030 Hb_009745_010--Hb_000363_180 Hb_001522_040 Hb_001522_040 Hb_009745_010--Hb_001522_040 Hb_009745_010--Hb_052117_010 Hb_001898_020 Hb_001898_020 Hb_009745_010--Hb_001898_020 Hb_000109_190 Hb_000109_190 Hb_005408_100--Hb_000109_190 Hb_005408_100--Hb_000320_270 Hb_002740_100 Hb_002740_100 Hb_005408_100--Hb_002740_100 Hb_005408_100--Hb_000753_120 Hb_004013_020 Hb_004013_020 Hb_000753_120--Hb_004013_020 Hb_031089_050 Hb_031089_050 Hb_000753_120--Hb_031089_050 Hb_000753_120--Hb_001948_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.0285 27.6138 20.3427 30.3358 4.96328 5.04328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.04185 1.90477 2.93838 9.4735 23.678

CAGE analysis