Hb_002909_110

Information

Type -
Description -
Location Contig2909: 62861-65319
Sequence    

Annotation

kegg
ID pop:POPTR_0016s02890g
description POPTRDRAFT_1102823; hypothetical protein
nr
ID XP_012089846.1
description PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JFU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01985 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30476: 52415-65445 , PASA_asmbl_30480: 63353-63520
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002909_110 0.0 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
2 Hb_002110_290 0.1739223754 - - ring finger protein, putative [Ricinus communis]
3 Hb_000442_120 0.1931192995 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012707_010 0.2042525426 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
5 Hb_000300_420 0.2084138858 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
6 Hb_000950_030 0.2126862742 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g10290 [Nelumbo nucifera]
7 Hb_003397_020 0.2190658196 - - -
8 Hb_000236_190 0.2196073399 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
9 Hb_033683_020 0.2224882444 - - hypothetical protein POPTR_1072s00200g [Populus trichocarpa]
10 Hb_006153_180 0.2240503117 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
11 Hb_000455_070 0.2270898364 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
12 Hb_130885_010 0.2293528621 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
13 Hb_048702_010 0.2311404092 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
14 Hb_001186_110 0.2347560923 - - hypothetical protein JCGZ_18389 [Jatropha curcas]
15 Hb_001486_350 0.2378114044 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
16 Hb_009674_010 0.2379358128 - - AAEL007687-PA [Aedes aegypti]
17 Hb_150486_010 0.2430971849 - - hypothetical protein CICLE_v100116733mg, partial [Citrus clementina]
18 Hb_000236_230 0.2448688809 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
19 Hb_044486_030 0.2462314001 - - DMI1, partial [Cycas revoluta]
20 Hb_004627_010 0.2464201145 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002909_110 Hb_002909_110 Hb_002110_290 Hb_002110_290 Hb_002909_110--Hb_002110_290 Hb_000442_120 Hb_000442_120 Hb_002909_110--Hb_000442_120 Hb_012707_010 Hb_012707_010 Hb_002909_110--Hb_012707_010 Hb_000300_420 Hb_000300_420 Hb_002909_110--Hb_000300_420 Hb_000950_030 Hb_000950_030 Hb_002909_110--Hb_000950_030 Hb_003397_020 Hb_003397_020 Hb_002909_110--Hb_003397_020 Hb_000455_070 Hb_000455_070 Hb_002110_290--Hb_000455_070 Hb_001186_110 Hb_001186_110 Hb_002110_290--Hb_001186_110 Hb_002110_290--Hb_000300_420 Hb_003185_070 Hb_003185_070 Hb_002110_290--Hb_003185_070 Hb_000054_010 Hb_000054_010 Hb_002110_290--Hb_000054_010 Hb_000392_530 Hb_000392_530 Hb_000442_120--Hb_000392_530 Hb_000094_200 Hb_000094_200 Hb_000442_120--Hb_000094_200 Hb_001486_350 Hb_001486_350 Hb_000442_120--Hb_001486_350 Hb_001269_580 Hb_001269_580 Hb_000442_120--Hb_001269_580 Hb_000442_120--Hb_002110_290 Hb_012707_010--Hb_000950_030 Hb_000696_070 Hb_000696_070 Hb_012707_010--Hb_000696_070 Hb_012707_010--Hb_001486_350 Hb_000806_130 Hb_000806_130 Hb_012707_010--Hb_000806_130 Hb_002157_270 Hb_002157_270 Hb_012707_010--Hb_002157_270 Hb_001989_100 Hb_001989_100 Hb_012707_010--Hb_001989_100 Hb_000236_190 Hb_000236_190 Hb_000300_420--Hb_000236_190 Hb_000300_420--Hb_000806_130 Hb_000077_100 Hb_000077_100 Hb_000300_420--Hb_000077_100 Hb_001329_180 Hb_001329_180 Hb_000300_420--Hb_001329_180 Hb_000236_180 Hb_000236_180 Hb_000300_420--Hb_000236_180 Hb_000580_110 Hb_000580_110 Hb_000300_420--Hb_000580_110 Hb_000950_030--Hb_002157_270 Hb_004055_020 Hb_004055_020 Hb_000950_030--Hb_004055_020 Hb_000950_030--Hb_000806_130 Hb_000950_030--Hb_001486_350 Hb_006634_110 Hb_006634_110 Hb_000950_030--Hb_006634_110 Hb_033683_020 Hb_033683_020 Hb_003397_020--Hb_033683_020 Hb_000115_370 Hb_000115_370 Hb_003397_020--Hb_000115_370 Hb_003397_020--Hb_000950_030 Hb_169018_010 Hb_169018_010 Hb_003397_020--Hb_169018_010 Hb_004627_010 Hb_004627_010 Hb_003397_020--Hb_004627_010 Hb_003397_020--Hb_004055_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.408409 2.06787 0.935467 55.2424 0.694531 6.11181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.64923 0.510805 5.60884 11.3569 18.733

CAGE analysis