Hb_002909_130

Information

Type -
Description -
Location Contig2909: 85819-87795
Sequence    

Annotation

kegg
ID tcc:TCM_041146
description Uncharacterized protein isoform 1
nr
ID XP_007015545.1
description Uncharacterized protein isoform 1 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GZJ9
description Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_041146 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30484: 85871-87775 , PASA_asmbl_30485: 85917-87806
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002909_130 0.0 - - Uncharacterized protein isoform 1 [Theobroma cacao]
2 Hb_172221_010 0.0614597197 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
3 Hb_000042_260 0.0666840458 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
4 Hb_000329_020 0.073302753 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
5 Hb_001085_270 0.0774413309 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
6 Hb_001158_230 0.0816483604 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
7 Hb_008948_050 0.0835706109 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
8 Hb_019516_100 0.084819058 - - 40S ribosomal protein S14, putative [Ricinus communis]
9 Hb_002588_010 0.0874782102 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
10 Hb_000567_410 0.0882456688 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
11 Hb_002811_080 0.0882890203 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
12 Hb_012395_130 0.0883845277 - - Os02g0814700 [Oryza sativa Japonica Group]
13 Hb_000203_020 0.0917751364 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
14 Hb_000331_700 0.092169446 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
15 Hb_000645_140 0.0930786851 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera]
16 Hb_000331_640 0.09415638 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
17 Hb_000093_110 0.0954816367 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
18 Hb_011311_010 0.0958397855 - - 60S ribosomal protein L27C [Hevea brasiliensis]
19 Hb_007497_030 0.09790465 - - mutt domain protein, putative [Ricinus communis]
20 Hb_000062_390 0.0979472321 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002909_130 Hb_002909_130 Hb_172221_010 Hb_172221_010 Hb_002909_130--Hb_172221_010 Hb_000042_260 Hb_000042_260 Hb_002909_130--Hb_000042_260 Hb_000329_020 Hb_000329_020 Hb_002909_130--Hb_000329_020 Hb_001085_270 Hb_001085_270 Hb_002909_130--Hb_001085_270 Hb_001158_230 Hb_001158_230 Hb_002909_130--Hb_001158_230 Hb_008948_050 Hb_008948_050 Hb_002909_130--Hb_008948_050 Hb_172221_010--Hb_000329_020 Hb_172221_010--Hb_000042_260 Hb_026398_010 Hb_026398_010 Hb_172221_010--Hb_026398_010 Hb_012395_130 Hb_012395_130 Hb_172221_010--Hb_012395_130 Hb_002588_010 Hb_002588_010 Hb_172221_010--Hb_002588_010 Hb_019516_100 Hb_019516_100 Hb_000042_260--Hb_019516_100 Hb_000042_260--Hb_002588_010 Hb_000042_260--Hb_000329_020 Hb_000042_260--Hb_026398_010 Hb_000329_020--Hb_026398_010 Hb_000331_640 Hb_000331_640 Hb_000329_020--Hb_000331_640 Hb_000329_020--Hb_019516_100 Hb_001369_170 Hb_001369_170 Hb_001085_270--Hb_001369_170 Hb_000567_410 Hb_000567_410 Hb_001085_270--Hb_000567_410 Hb_000061_130 Hb_000061_130 Hb_001085_270--Hb_000061_130 Hb_001085_270--Hb_172221_010 Hb_000193_120 Hb_000193_120 Hb_001085_270--Hb_000193_120 Hb_002687_170 Hb_002687_170 Hb_001158_230--Hb_002687_170 Hb_001158_230--Hb_019516_100 Hb_000933_160 Hb_000933_160 Hb_001158_230--Hb_000933_160 Hb_076626_010 Hb_076626_010 Hb_001158_230--Hb_076626_010 Hb_007944_040 Hb_007944_040 Hb_001158_230--Hb_007944_040 Hb_005181_030 Hb_005181_030 Hb_001158_230--Hb_005181_030 Hb_000645_140 Hb_000645_140 Hb_008948_050--Hb_000645_140 Hb_008948_050--Hb_002588_010 Hb_001386_050 Hb_001386_050 Hb_008948_050--Hb_001386_050 Hb_008948_050--Hb_000042_260 Hb_008948_050--Hb_019516_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.7583 12.263 26.6092 22.0105 24.0793 37.2098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
69.9188 218.209 58.6767 40.7273 25.5673

CAGE analysis